Tremella mesenterica: TREMEDRAFT_41061
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Entry
TREMEDRAFT_41061 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_41061
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_41061
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
90S particles
Helicases
TREMEDRAFT_41061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
T4SS-DNA_transf
CMS1
Motif
Other DBs
NCBI-GeneID:
18493210
NCBI-ProteinID:
XP_007007886
JGI:
Treme1_41061
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MASSAFNLLTAGGARFDKRRFNDDIRLFTQPSSKSSKRQRTQALPSDQLPTSLDVFHDHT
HPSNRPPASSSSEDELPRPPKQKITITGSDPLPKSLHTNMPSLFNHPPSPLTSAQGQPLL
TALKAAGIHSLWGVQCAVAGSLLEGHDTLCIAPTGSGKTLAYLLPTLVRLQDPVRTLTAE
DKGQGVRAIVLVPTHDLAVQIHGVLKVMCKGRKWRCLVLSKATEMAKTRRAGLGIDILVA
TPERLHHLINEQRVSLAETSHIILDEADRLLSPDFLPQVEPIVEACTHPKVQKCLLSATI
PAGAEALARTWLREGGVRIVVGIKDSAVTTVDQSLVFTATESGKLMTLRQLISSGDLPYP
SLIFVQSIERAEELCKTLALEGVKVDMVHGGRSRTKREEAVVRFRKGDVWILVVTEVLAR
GMDFRGVKVVINYDFPQTVQSYIHRVGRTGRAGRPGKAITFFSHEDGPYLRTIANVLRSS
GCPVPQYMLDLPAPSKNQKRHLAKVPVKRKSVGGGGRDVGKEKSQKKREMKEASKRKRDH
HVESES
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcagcattcaacctgctcaccgctggaggggccaggtttgacaagagacgt
ttcaatgatgatatacgtcttttcacccagccctcttccaaatcctcaaaacgtcaacgt
acacaagctcttccttctgaccaactccccacctccctcgacgtctttcacgatcacact
catccttccaaccgtccacccgcatcgtcatctagcgaggacgaactgccccgaccaccc
aaacagaagatcaccatcaccggctctgacccactcccaaaatctttacacaccaacatg
ccgtctcttttcaatcacccaccttctccgctcacttcggcacagggtcaacctcttctt
actgctctgaaagccgctggcattcattcgttatggggcgtccagtgtgccgtcgccgga
tcgttgctggaaggtcatgatactctttgcatagccccaacgggatcaggaaagacatta
gcttatctactacccacactggtcaggttacaagatcctgtcagaactttgacggccgag
gataagggacaaggagtgagggcgattgttcttgttccaacgcatgatttggccgttcag
atacatggggtgctgaaggtgatgtgtaaagggaggaagtggaggtgcttagtactgtcc
aaggccacggagatggcaaagacgagaagggccggactagggatagacattttggttgct
actccggaacgtctccatcacctcatcaacgagcaacgtgtctctcttgcagaaacaagt
catatcatcctggacgaagcggaccgactgttgtcaccagatttcttaccccaagtcgaa
cccatcgtcgaggcttgtactcatccgaaagtgcagaaatgtctcttgagcgctactata
ccagctggggcggaggctttggctcgaacctggctcagagaaggtggagtgagaattgtg
gtaggcataaaagactccgccgtcacgaccgtcgaccaatctctagtatttacagcaacg
gaatctggaaaactcatgaccctccgtcaactcatttcatccggcgacctcccttaccct
tccctgatcttcgttcaatccatcgagcgcgcagaagaactatgcaaaaccctcgctctg
gaaggtgtcaaggtggatatggtacatggaggtcggagcaggaccaaaagggaggaagct
gtggtaagatttaggaaaggagatgtatggattctggtggtcaccgaggtactcgcacga
ggcatggatttcagaggagtcaaggtggtgataaattacgattttccgcaaacggtgcaa
agctacatccatcgtgtaggtcgtaccggtcgcgctggtaggccaggaaaagccatcaca
tttttcagccacgaagatgggccgtatctccgaaccattgccaacgtccttcgttcctcc
ggctgtccagtaccccaatacatgctcgatctccctgctccgtcaaagaatcaaaaacgt
catctcgccaaagtgccagtaaagcgaaagtctgtcgggggaggcgggcgggacgtgggc
aaggagaaaagtcagaagaagagggagatgaaggaggcttcgaaacgcaaacgagaccac
catgtagaaagcgaatcatga
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integrated database retrieval system
