Tremella mesenterica: TREMEDRAFT_41480
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Entry
TREMEDRAFT_41480 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_41480
Enzymes [BR:
tms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
TREMEDRAFT_41480
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
TREMEDRAFT_41480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
18493246
NCBI-ProteinID:
XP_007000917
JGI:
Treme1_41480
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MRILTWNVNVLRTCLDYHPFSSLKKRNIEGLLDELGAQIVCFQEHKTRRPQLDKTMACPG
PYDAFWTFPRSKTGYSGVCTYVDSRICVPLKAEEGITGLLLGDSSSTMRPPWSAEERIGC
YPDMEELSFENELDGSVFDPKRLDMEGRAVVCDFGLFVLFNLYCPNETNDSRRPYKMNFF
HALQARVRALQAAGREVIIAGDINIMRAPIDSGEGGIRTSAEQHYQHPARVILNDWCAPK
GPMIDVVRESWPDRDDMFTCWNQKLDARPSNYGSRIDLILCTPGLRPWIKGGDIVPKVYG
SDHCPVYIDLHESISLPSGQILTLHDALNPLDRPPTTTTIFPSDVTREAPEPPRFATKFW
DEFSGRQTTLKSFFGSGPKVRSVSVISTGTNDVSPSPVAGPSSGVAGLEKTAEPIMEARP
SISVIEDTPQTPFGMARMAFNSIDNPSTSTSQPQSSSGTQKRRTSIEIIDEDEPSPKRST
SQSSQSKESKNSNKNKSKPPTNGQTKLSSFFAQPPSSAKRKSPPTPVPKSSKSPKSKTTP
TSPAEKVERGTTAEEDALIAQALAEADEVKAQKRAKTNAEAAPVWSNLFAKKIPPLCTVH
QQPCKDFIVKIPGPNKGKRFWLCSLPVGAGYDTGRSKRPREDVNRDFRCDYFLWDSANRQ
KEHTGTSG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcctgacttggaatgtgaacgttttgagaacttgcctggactatcatcctttc
tcatcgttgaagaaacgcaacatcgagggattactggatgagcttggcgctcaaatcgta
tgcttccaagagcacaaaactcgtcgtccacaactggacaaaactatggcctgtcctgga
ccatatgacgccttttggacctttcctcggtccaaaacaggttattcaggtgtatgcact
tacgtcgattctcgtatttgcgtccctctcaaagctgaggaaggcatcaccggactgctg
cttggtgattcgagcagtaccatgcgaccgccttggtcggcggaggagaggatagggtgt
tatcccgatatggaagagttgtcgtttgaaaacgagctcgatgggagcgttttcgatcct
aagcgattagacatggaaggaagggctgtggtgtgtgattttgggctcttcgtcctcttc
aacctgtactgtcccaacgagacaaacgattcgcgtagaccgtacaagatgaacttcttc
catgccctccaagctcgggtgagggctcttcaagcggcaggaagggaggttatcatcgct
ggggatatcaacatcatgcgagcacctatcgattctggtgaagggggtataagaacttct
gcagaacaacattatcaacatcctgctagagttatcttgaacgactggtgtgctcccaaa
ggaccgatgattgatgttgtacgggagagttggcctgatagggatgatatgttcacttgt
tggaatcaaaagttggatgcgagaccatcaaattatggttcccggatagacctcatcctc
tgcactccaggtttgagaccctggatcaaaggtggtgatattgttccaaaagtttacggc
tcggatcattgtccagtctatatagacctacatgaatctatcagtcttccttccggtcaa
atcctcactcttcatgacgctctcaacccattggatcgaccaccgacgacaaccacaata
tttcctagtgatgttactcgagaagcaccagaaccaccgagattcgccacgaaattttgg
gacgaatttagcggtcgtcaaaccactttgaagagtttcttcgggagtggaccaaaagtt
aggagcgtatcggtcatcagtacagggaccaatgacgtctctccatctcctgtggccggt
ccgtcgtccggagtggctggattggagaagactgcagagccgatcatggaggcccgaccg
tcgatttcggtcattgaagacacccctcaaacaccatttgggatggctcgaatggctttt
aattctatcgacaatccatcgacgtcgacctctcagcctcaatcttcaagtggtactcaa
aagcggagaacaagtattgaaataattgatgaagatgaaccctctcccaaacgttctact
tcacagtctagtcaatcgaaagaatccaagaacagtaataaaaacaagtcgaaacctcct
accaatggtcagactaaactctcttcatttttcgctcaaccgccctcatcggcaaaacgg
aaatctccacctactcccgtccccaaatcttccaaatctcccaagtcgaagacaacccca
acgtcccccgcggagaaagtcgaaagaggaacgacggctgaagaagacgccttgatagct
caagctttagcggaagcggatgaagtcaaagctcaaaaaagagcgaaaaccaatgctgaa
gctgcccccgtgtggtcaaatttgttcgctaagaagattccacctttgtgtacagtacac
caacaaccatgtaaagattttattgtgaaaatacctggaccgaataagggaaaaaggttt
tggctatgttctcttcctgttggagcggggtacgacactggaagatcgaagagacctcga
gaagatgtcaatcgtgatttccgttgtgattattttttatgggattctgccaatcgacag
aaagagcatacaggtacttctgggtga
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integrated database retrieval system
