Tremella mesenterica: TREMEDRAFT_43021
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Entry
TREMEDRAFT_43021 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tms
Tremella mesenterica
Pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_43021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_43021
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_43021
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
TREMEDRAFT_43021
Spliceosome [BR:
tms03041
]
Complex B
Other components
Prp19-related factors
TREMEDRAFT_43021
Complex C
TREMEDRAFT_43021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_12
Suf
TPR_2
TPR_15
Mad3_BUB1_I
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
18493438
NCBI-ProteinID:
XP_007002586
JGI:
Treme1_43021
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MSDEPSSSLVTNLSSRFPLTVPIPTPLTHPHLISHADLATEEDLLHNPDNLRSWLSYIGQ
IKDRISKTLPLAPDTPSPEEQLLGPLSSHVAREGLQQLVSIYERALAVFPSSFKLWRGYI
VTRQAYVLGEPTEQAKKARQQHAKRGATYKTSVTEMLDGAEEEFQWEGGLDGVVGYQEWR
SLFAVGERMLGWLSHLPVPWLLHLSVLLHPKCPAPFKWTYARRTFDRALRTLPPSLHARV
WGLYLRWAEMVGGEAGERVWRRFLKADNSLTERHISFLLDSKPPQPLTAAKYLLLLARRA
AKSTYIPLDGKSPYQLFVDFMELVEKYAEDVGMTEEETLAIRPAQSTSDAAPMTHGEQQV
REQQEPENQSASVEGRLMRIAGPPIPTKSGQLDESIEDEDTDPSNPRLLDVEHIVERDGL
QVYKDQAGRLWTGLATYWIKRGEFERATATFERGLAAVVTIRDFTQIFDAYAEFSETMIS
TLMDALADEDNLEDEEFDAEETEKELDERMKAFEELMDRRPFLVNEVLLRRNPNEVIEWE
KRVALFGDNDEKVIETYLKALETINPRKATGPLYPLYVNFAKFYEEGGSKDAETDEPRNE
PNLVEARKILDKATKVHFKTVDELAEVWCEWAEMELRNENYDEAVRLMQRATTVPKNTKV
DYYNDSVPPQARLFKSLKLWSFYSDLEESIGTVDSTKMVYDKIMELKIANAQTIVNYAAF
LEENKYFEESFKIYERGIELFHFPVAFEIWNIYLSKFVRRYGGKKLERTRDLFEQALENC
PAKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDSDKFEMFTIYIAKAAANFGLPA
TRPIYERALEVLPDKNAAEMCRRFARMERKLGEIDRARAIYAHASQFCDPRVEPEFWNEW
NMFEVDTGSEDTFREMLRIKRAVQASFNTEASFITAQAAAARKGTEKPTDVAKQTAKDAA
DPMAAMERDMVTTGGKGAPAFVASSLNRTNVNGIDEGQEGGEEVINPDAIEVEDDDI
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgaaccatcatcctccctcgtcacaaacctttcctctcgatttcctctcact
gtccctataccaacccctctcacccacccacatctcatttcccatgccgatctggcgaca
gaagaagatcttctccacaatcctgacaaccttagatcctggctctcctacattggtcaa
atcaaagacagaatatccaaaaccctcccacttgctcccgacactccttcaccggaagaa
caactccttggtccactttcatcccacgttgcaagagaaggacttcaacaattagtcagt
atatacgaacgtgctctcgccgtcttcccgtccagcttcaagctttggaggggatacata
gtgacaagacaagcttacgttctcggagaacctacggaacaagccaaaaaggctagacaa
caacatgcgaagcggggtgcaacgtacaaaacgagcgtcactgagatgcttgatggtgcc
gaagaagaatttcaatgggaaggaggtttagatggtgtggtaggatatcaagaatggcgt
agtctgtttgcggtaggggagagaatgttgggttggttgagtcatcttcccgtaccttgg
ttattgcatctctcggtgttattacatccgaaatgtccagcaccgttcaagtggacatac
gcaaggagaactttcgatcgtgctttgcgtaccttaccacctagtttgcatgctagagtg
tggggtctctatctaagatgggcggagatggtaggtggagaagcgggggagagagtatgg
agacgattcctgaaagcggataatagtctcacagaaagacatatttcatttctactcgat
tctaaacctcctcaacctcttacagccgccaagtatttgctactgttggccagaagagcg
gccaagagtacttacattcccttggacggaaaatcgccatatcaactttttgtcgatttc
atggaactcgtggagaaatacgccgaggatgtgggaatgacagaagaggagactttggct
atccgacctgctcagagcacaagtgacgctgcgcctatgactcatggggagcagcaggtt
agagaacaacaagagccggaaaaccaatctgcaagtgtggaagggcgactgatgcggatc
gccggcccacctatacccacaaagtcaggtcaattggacgaatctattgaagatgaagat
accgacccttccaatccccgtttattggacgtcgagcatatcgtggaaagggatggttta
caggtgtacaaagatcaggctggtcggttatggacaggtctcgccacgtattggataaaa
cgaggggagtttgaacgtgccaccgcgacatttgaacgaggtttagctgctgtcgtgact
atccgtgactttacacagatctttgatgcctacgccgagttttccgagacgatgatatcc
accttgatggatgcactagccgacgaggataacttggaggatgaagagtttgatgcggag
gaaacggagaaagagttggatgaacgtatgaaagctttcgaagagctcatggatcgaaga
cctttccttgtcaatgaagttttacttcgacgtaatcccaacgaagtcatcgaatgggag
aagcgagttgctctctttggagataatgatgaaaaagtcattgagacttacctcaaagct
ttggaaactataaatcctcgtaaggccacaggtcctctttaccctttgtacgtcaacttt
gccaaattctatgaagaaggggggtcaaaagatgccgaaacggacgaaccgaggaacgag
cccaatctcgtcgaagctaggaagattttggacaaggctacaaaggtacatttcaaaacg
gtagatgaattagctgaggtgtggtgtgaatgggccgagatggaattgcggaatgagaat
tatgatgaagcggtgaggctcatgcagcgagcgacgacagttcctaagaatacaaaggtg
gattattacaatgattcggtacctcctcaagcgaggttgttcaagagtttgaagctgtgg
agcttttacagtgatttggaggagagtatagggacggtcgactcaacgaaaatggtttat
gataagatcatggagctcaagatagccaatgctcagaccattgtgaattatgctgcgttt
ttggaggagaataaatatttcgaggagagtttcaaaatttacgaacgcggtatcgagctg
ttccatttccccgtagctttcgaaatctggaacatttacttatctaaatttgtcagacga
tacggaggcaaaaagcttgaacgcacccgggacctcttcgaacaagctctcgaaaattgt
cctgccaaattctgcaaacctctttatctcatgtatgccaaattggaagaagaacacggt
ctggctaaacgtgctatgggtatatatgaccgagccgcttctaccgttcaagattcagac
aagtttgaaatgttcaccatttatattgccaaagcagctgcgaactttggtttaccagct
acgagacctatatacgagagagcattggaagttttgcctgataagaatgcggcggagatg
tgtagaaggtttgcacggatggaaaggaaattgggtgagattgatagagctagggctata
tatgcccatgccagtcaattttgtgatcccagggttgagccggagttctggaatgagtgg
aacatgtttgaagtcgacacaggatcagaagacacattcagggaaatgttacgtatcaaa
cgtgccgtccaagcatcattcaatactgaagcttcattcatcaccgctcaagctgctgcg
gctcgtaaaggaacggagaaacctacagatgtggctaaacaaaccgctaaagacgctgcg
gatcctatggcagctatggaaagagatatggtgacgacgggagggaaaggtgctccggca
tttgtggcttcttcgttgaatcggactaacgtcaatgggatcgatgagggtcaagaagga
ggtgaagaggtcatcaatccggatgctatagaagtggaagatgatgatatctag
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integrated database retrieval system
