Tremella mesenterica: TREMEDRAFT_43487
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Entry
TREMEDRAFT_43487 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_43487
04121 Ubiquitin system [BR:
tms04121
]
TREMEDRAFT_43487
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
90S particles
Other 90S particles
TREMEDRAFT_43487
Ubiquitin system [BR:
tms04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
TREMEDRAFT_43487
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Gly_transf_sug
Caps_synth
Motif
Other DBs
NCBI-GeneID:
18493506
NCBI-ProteinID:
XP_007003970
JGI:
Treme1_43487
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MSLFGQTKRHGITKLGRRSPLPIFTTDPEKKYGHSLTSPSSTSSNFFSVFYLPMPRLPFL
RSSSSEILLNGNGLSSKPYHSNSHRPRRYVRICLPIPPRILSRLSRSNPLRTVFILFVCL
LFGIFLLGFRKRGHGRNTWSPPFVDPNTSVLSPEEIAMIWEWEVLSGHHPSTQLAPDNIP
LVPTIHNPVVPESLLPSLSSPSPLVAYHQRGATNPRTQIIGRGPDRHYIPVQEFINTNPG
FPYRPTPGTIIDLDLVVEKCDFGTNKYVRDCLEYLRIGAGLDNGRRVRRGNYLGMYKHLY
SESSTPSKQFTLSPRPPSIHSPRSSREPLSLPPPFPVSPTFSSDDPCDPLHPRIFHMFWA
GPFTDKPYMAVMSFLFTQNLGLDRPLSEQSTIIRDTCRPQFWVWINPGPAAAVPNPSARR
EMLEQLNTNPWSAPFLHDRFRDVVKFKMWNTTEQLDGIPELKNYWRDMPIFNSGGNTYLL
EEEAESELESEVSTEAFQPKKKKDIFEKVGSASESDYDRLSVILSDMARFVLTHRFGGIY
LDADTIFLRDWEELWNYRGQFAYRWSWHQKYNTAVLKLHKGSALASFLFKTALENGLDFH
PMTVSRYLKDAGLERLLFRIPDALFDPAWLNMERYQRDRPPFPYFPEFSFFFSNDKFDTA
GPQPLGFDGFFRGAFSYHFHNFWWLPFDPSRNWPDLGPRFSEGENSIREGMGEKVSFEGE
EQGGVGGVSKREDMDDEVDLSWSTVLKRTFEGFVRGERPNMYGEWLVW
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttttcggtcaaaccaaaagacacggcatcaccaaattaggtagacgttcacct
cttccaatattcactaccgacccagaaaagaaatacggtcattctttaacttccccttct
tcaacatcatcaaatttcttctcagtgttctatctcccaatgcctcgacttccattcctc
aggagttcttcatctgaaattctgttaaatggaaatggattatcttccaaaccttatcat
tccaactcacatcgacctagacgttatgttcgtatatgtcttcctatacctcctcgaata
ttatcacgattatcacgttcgaatcctctgcgaacagttttcatcttattcgtctgtcta
ttattcggtatattcttattaggatttagaaaaagaggtcatgggagaaacacatggtca
cctccttttgttgatccgaatacttcggttttatcaccagaagaaattgctatgatttgg
gaatgggaagtcttaagtggtcatcatccaagtactcaattagcaccagataatatccct
ctggtacctactatacataatccggtagtaccagaatctctcttaccttcattatcttcc
cccagtcctctcgtagcttaccatcaacggggcgctacgaacccacgtactcagatcatt
ggaagaggaccagatcgacattacattcctgttcaggaatttatcaacactaatcctggt
ttcccatatcggccaactccgggaacgatcatcgatctggatctcgtcgtagagaaatgt
gattttggtactaacaaatatgttcgagactgcctcgaatatcttcgaatcggtgctggt
cttgacaacggtcgacgggtccgacgtggcaactatttgggcatgtacaaacatctctat
tccgaatcatccaccccttccaaacaattcactctctcccctcgaccaccatccatccac
tcacccagatcctcccgcgagcccctctccctcccacctcccttccccgtatcaccgacc
ttctcttcggatgacccatgtgacccccttcaccctagaatattccacatgttttgggca
ggaccattcaccgacaaaccctatatggcagtcatgtccttcctctttacccaaaatctc
ggtctagacagacctctgtctgaacaatcgaccatcattcgtgatacctgccgaccgcaa
ttttgggtatggatcaaccctggtccagcagccgccgttcccaatccatcagcaagaaga
gaaatgctggagcaattgaacaccaatccatggtcggccccgttcctccatgatagattc
agagacgtggtcaagttcaaaatgtggaatacgacagaacaattagatggaataccagag
ttgaaaaattattggcgtgacatgccaattttcaattctggaggaaatacatatctatta
gaagaagaagcagaatcggaattagaatctgaagtatctacagaagctttccaaccaaaa
aagaagaaagatatatttgaaaaagttggttctgcttcggagagtgattatgaccgatta
tccgtcattttatccgatatggctagattcgtactcacacatcgattcggtggtatttat
ttagatgcggatacgatattcttgagagattgggaagaattatggaattacagaggtcaa
ttcgcatatcgttggtcttggcatcaaaagtataataccgcggttttgaaattacataaa
ggaagtgctttggcttctttcttgttcaaaactgctttggaaaatggattggattttcat
ccaatgacggtttcgagatatttgaaagatgcaggtttggaaaggttattattcagaata
ccggatgctttgtttgatcctgcttggttaaacatggaaaggtatcaaagagatagacca
ccttttccttatttcccagaattctcattcttcttttcaaacgataaattcgatacggca
ggtcctcaaccactcggattcgacggtttcttccgtggcgcattctcttaccatttccat
aatttctggtggttaccattcgacccttcacgaaattggcccgatttaggaccgcggttc
tcagaaggggagaatagcatacgtgaaggtatgggggagaaggtgagttttgaaggggaa
gaacaaggaggtgttgggggagttagtaagagggaagatatggatgatgaagtggatttg
agttggagtacggtattgaaaaggacttttgagggttttgtgagaggtgaaagaccgaac
atgtatggggaatggttagtttggtga
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