Tremella mesenterica: TREMEDRAFT_43516
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Entry
TREMEDRAFT_43516 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_43516
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_43516
03036 Chromosome and associated proteins [BR:
tms03036
]
TREMEDRAFT_43516
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_43516
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TREMEDRAFT_43516
mRNA cycle factors
Common to processing body (P body) and stress granule
TREMEDRAFT_43516
Spliceosome [BR:
tms03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
TREMEDRAFT_43516
Chromosome and associated proteins [BR:
tms03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
TREMEDRAFT_43516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
18493512
NCBI-ProteinID:
XP_007003976
JGI:
Treme1_43516
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
MTNPPVNNVNGTNASTNGTTGLEKKFNSIALNPTRPAYVPPHLRNAPAQPAANFVPTSNG
YQTGPAGLPTPAATPPTRGAYIPPARVSAGPPEDGGWGAPRRPVERSFGSGPPGFGSWKN
GHVIGPRNPRLEAELFGVEGDGVHQATGINFDKYADIPVEATGQGVPEPVLEFTNPPIDP
VLLENIRLARYTTPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPILSAMYAVGPSA
PPPDNFGYGRKKSYPTALILAPTRELVSQIHDEARKFAYRSWVRPAVVYGGADIGQQIRA
LDRGCDMLSATPGRLVDLIERGKISLSNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPG
VMQRQTLMFSATFPKEIQLLARTFLKEYIFLSVGRVGSTSENITQRVEYVDDHDKRSLLL
DLLLAEESGGLVLVFVETKRMADNLCDFLCAQRHNATSIHGDRTQREREAALLAFRTGRA
PILVATAVAARGLDIPNVTHVILYDLPTDVAEYTHRIGRTGRAGNTGTSTAFFNRNNLNL
ARDLVDLLTEAHQTVPQFLIDISSERSFGFSSRPARGRGGGRGGGRDARAGGGGGGGYGA
GARNGGGGGGYGGGGYGGGGGGGFGGYGGAAAGGFTPAPASTSWW
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacccccctgtcaacaatgtcaacggtactaatgcaagtaccaatggcactact
ggtttagagaagaaatttaattcgattgctcttaatcccacgcgaccagcttatgtcccg
ccgcaccttcgcaacgcacctgctcaaccagcagcgaatttcgtacctacttccaacgga
tatcaaactggtcctgctggtcttcctactcctgcggcaacccctcccacccgtggggct
tacatcccacctgcaagggtctccgctggacctcccgaagacggaggttggggtgctccc
agacgtcctgtcgaaagaagcttcggttccggtcctcctggattcggatcttggaaaaat
ggtcatgttataggtccacgtaaccctcgtcttgaggctgaactctttggcgtagagggt
gatggtgttcatcaagccactggtataaactttgataaatatgccgatattcccgtcgag
gctaccggtcaaggtgttcctgaacctgtgttggaattcaccaacccgcctattgatcct
gttcttcttgagaacatccgtttagctcgttataccacccccacccccgttcagaaatac
tcgattcccatcgttgcgaatggtcgtgacctcatggcctgtgcccagacgggttcaggt
aaaacaggtggtttcctctttcccattttgtccgccatgtacgccgtcggaccttctgct
cctccccccgacaatttcggttacggaaggaaaaagtcctatcctaccgctttgatcctc
gctcccactcgtgagctcgtatcccaaatccacgacgaagctcgtaaattcgcataccgt
tcttgggtccgacccgcggtcgtttatggtggtgccgatatcggtcaacagatccgtgct
ctcgacaggggttgcgacatgctctccgccacacccggtcgtcttgtcgatctcatcgaa
cgtggaaagatttctctttccaacatcaagtatctcgtacttgacgaagctgatcgaatg
cttgatatgggtttcgaacctcagatccgtcgtatcgttgaaggtgaagatatgcccggt
gtcatgcaacgtcaaacactcatgttctcggctactttccccaaagagattcaattactc
gctcgtactttccttaaagaatatatattcctctctgtaggacgtgtgggttccacttcg
gaaaacatcactcagcgcgtcgaatatgtcgatgaccacgacaagcgctctcttctcctc
gacttactccttgctgaagaatctggcggtttggtattggtcttcgttgaaacgaaacgc
atggccgataacctatgcgacttcctttgtgctcaacgtcacaatgctacctctattcac
ggagatcgaactcagcgtgaacgtgaagctgctctgctagcttttaggactggtcgtgct
ccgatcctcgtggctacagccgtcgctgctcgtggtttggatattcccaatgtcactcat
gtcatcctttacgaccttcctaccgacgttgccgaatacactcatcgtatcggtcgtacc
ggtcgtgctggtaacaccggaacttccacagctttcttcaaccgtaacaatctgaacctc
gctcgtgaccttgtcgacctcctcactgaagcgcatcagactgtcccgcagttcctgatc
gacatatcttcggaacgttctttcggcttctctagccgccccgcacgtggtcgcggtggt
ggacgcggtggaggtagagacgcccgtgctggcggtggaggtggaggtggatatggtgct
ggagccagaaacggaggaggaggtggtggttatggaggtggcggttatggcggtggtggt
ggtggtggttttggtggatacggcggtgctgctgctggtggtttcactcctgctcccgcc
agtactagctggtggtga
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