KEGG   Tremella mesenterica: TREMEDRAFT_43580
Entry
TREMEDRAFT_43580  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
tms  Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:tms00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tms03009]
    TREMEDRAFT_43580
   04121 Ubiquitin system [BR:tms04121]
    TREMEDRAFT_43580
Ribosome biogenesis [BR:tms03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    TREMEDRAFT_43580
Ubiquitin system [BR:tms04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     TREMEDRAFT_43580
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Sof1 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I WDR55 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_SCAP WD40_RFWD3 Beta-prop_RIG_1st YopH_N CNH
Other DBs
NCBI-GeneID: 18493517
NCBI-ProteinID: XP_007003981
JGI: Treme1_43580
LinkDB
Position
Unknown
AA seq 556 aa
MKIKMISRSLDDHLPSSSTAPHPLQRNLAPHLHPFAKPREYTRALTAAKIDRMFAKPFVG
ALSGHQDGVYCLAKDPRRAAVVAGGGGDGEVIVHSLSLRRPLLKIPQAHKGMVGGMCWTA
EARDGKRGLVTVGKLDGVIKVWRSEAFAPGLRDKEVFEGNEFGEGSSAQPLDVLDVAGAL
GEDGFDFDEEGGGLNLDQGKRDLIGSQLEPSMTYVGKNGFNAVDHHREENQFATASNVVQ
IWDEMRSTPLSTLAFGNSQETVSSVRFNQSETSVLASVGNDRTMCLYDIRTGKAERRIVM
SFRSNQLSWCPTLPTVMLLASEDHNLYTYDIRNLETPTQIYKGHVGGVMGCDWSPTGEGF
VSGSWDRTIRLWNRESGKSRDVYHTKRMQRVFDVAYTPTADFVLSASDDGNVRRIWKSNA
SKKLGPVSTKERQAIEYREALIERWGTVGDVRAVHERRHVPSSVHSTIKLKRDMVESIKS
KEDRRRKHSRAGLEKPKAERKSESFVLICETVTDFTQKLSLWSRSDRGNVCYSIFNFMHP
SIDLSWSMQSTTRALA
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgaagatcaaaatgatatctcggtctcttgacgaccatctaccttcctcctccaccgct
ccacatccacttcaaagaaaccttgcacctcatcttcacccatttgccaaaccccgtgaa
tacacacgagctcttaccgcagcgaaaatcgacaggatgttcgccaaacctttcgttggc
gctttgagtggtcatcaagatggagtttattgtcttgcgaaagatcctcgaagagctgcc
gtggtagctggaggaggtggtgatggcgaagttatcgttcactctctttctttacgtcga
cctctgctcaaaattccccaagcgcataagggtatggtgggaggtatgtgttggacagcc
gaagctagagatgggaaaagaggtcttgtaaccgttggtaaactcgatggtgttatcaaa
gtctggagaagtgaagcatttgcacctggtttaagagataaagaagtttttgaaggaaat
gaattcggagaaggttcttctgctcaacctttagatgttttagatgttgctggtgcatta
ggagaagatggatttgatttcgatgaagaaggtggtggtttgaatttagatcaaggaaaa
agagatttgataggaagtcaattggaacctagtatgacatatgtgggaaagaatggattc
aacgctgtggatcatcatagagaagaaaatcaattcgctacggcaagtaatgtggttcaa
atttgggacgaaatgagatcaacaccattatcaactttagcttttgggaattctcaagaa
actgtgagtagtgtgaggtttaaccaaagtgaaaccagtgtattagcctcggttgggaat
gataggaccatgtgtttatatgatatccgaactggaaaagcagagagaagaatagtaatg
tcttttcgatcaaatcaactttcttggtgtccaactttacccacggtcatgttactcgct
tcggaagatcataatctatacacgtacgatataagaaatcttgaaactcccacgcagata
tataaaggacacgtggggggtgtcatgggatgtgattggagtccgactggggaaggattc
gtttcaggcagttgggatcgaactatccgtctatggaatagagagtctggcaagtcgagg
gatgtatatcacacaaaacggatgcaacgagtgttcgacgttgcatatacacccacagca
gactttgtcctttcagcttctgatgatggtaacgtccggagaatatggaaatcgaacgct
tctaaaaaacttggacccgtatcaacgaaagaacgtcaagctatagaataccgggaggcg
ctcatcgagcgatggggcaccgtgggagacgttcgagcggtacacgagagaagacacgtg
ccttccagcgttcacagcactatcaaactcaagagagatatggtggagagcattaagagc
aaagaggacagaaggagaaaacattctcgagcgggattggagaaaccgaaagcggagaga
aagagtgagtcgttcgtgttgatctgtgagactgttactgattttacccagaagctgtca
ttgtggagcagaagtgatcggggcaatgtgtgttatagtatcttcaactttatgcatcca
agtattgacttgtcttggagcatgcagagcacgactagagcgcttgcctag

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