Tremella mesenterica: TREMEDRAFT_44066
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Entry
TREMEDRAFT_44066 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_44066
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TREMEDRAFT_44066
Spliceosome [BR:
tms03041
]
Complex C
Other components
Complex C specific factors
TREMEDRAFT_44066
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
SRP54
AAA_7
ABC_tran
nSTAND3
AAA_14
T2SSE
DUF2406
AAA_30
Motif
Other DBs
NCBI-GeneID:
18493579
NCBI-ProteinID:
XP_007004533
JGI:
Treme1_44066
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MPPQFWKPGTAAPGSSLDRDTETEGSLLPSLNPQTAHLSLDAQRQRLPIYKHREKLLWCV
EKYRVVIVVGQTGCGKSTQIPQYLHEVGWTSQNLVVACTQPRRVAATSVATRVAEEVGSV
LGDEVGYSIRFEDLSSPTRTRIKYMTDGMLFRECMTDPLLSRYSVIMVDEAHERGAYTDL
LLGLLKKIMRKRPELRVIISSATIDAEDFYEYFNSNSDHADRSKDDAIIVSLEGRMFPVE
VCYLKQPCDDYCAAAVQTVFDIHLREPSGDILVFLTGREEIDSVIQQVTDRLQSLPRAAP
QILPLPLYATLPAEEQAIIFEPPPRDTRKVIFSTNIAEASVTIDNIRYIVDSGFVKLKTF
NPRTNMDVLTVTPCSLASANQRAGRAGRTSAGKCFRLYPASMLPTRNPRSPMPLQTPPEL
TRSDISLYLLQLKALGIDNVAKFDFLSPPSSEMMIRALEFLYCLKAIDDEGRLTRPLGER
IAEVPLDPMMAAILLNSAAFKCSEEILTIAAMTSVQDVFIQPSGGMKATMAELERRKFTA
EEGDHLTLLNAYNAFTRFGAKDKSWCGNHRLNFKALSRAMSIRKQLKKYLERFGIKIQSC
EGDVVRLRKCLVTGYFKNAARMMPDGSYRSARENAILHVHPNSVMFTRQPSTGWVIYHEV
VETTKRFMRDLTVVEEEWLVELAPHYYQFKGGGIKKHFKD
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcagttctggaagcccgggaccgcagctcctggatcttctttagacagagac
accgagacagaaggttctcttctcccttctctcaatcctcaaacggctcatctatccctt
gacgctcaacgacagagattgccaatctacaaacatagagaaaaacttctttggtgtgtt
gagaaatacagagtggtcatcgttgtcggtcaaacaggttgtgggaaatctactcaaata
cctcaatatctgcatgaggtaggatggacgtcccaaaacctcgtcgttgcttgtactcag
cccagaagggtagctgcaacatcagttgccactcgcgtagctgaagaagtcggaagtgtg
ctaggagatgaggtggggtattccattagattcgaagatctatcaagtccgactcggacg
aggataaagtatatgacggatgggatgctgttcagggagtgtatgacggatcccttgttg
agtcgatatagtgttatcatggtggacgaagcacatgaacgaggtgcatataccgatctc
cttttggggttattgaaaaaaatcatgcgtaaacgtcctgaactgagagtcatcatttcg
tccgcgactatcgacgcagaagacttttacgaatatttcaactcgaactccgaccatgcc
gatcgatccaaagatgacgccatcattgtcagtctcgaaggtcgcatgttccccgtcgaa
gtctgttatctcaagcaaccatgtgatgattattgtgcagccgccgttcaaaccgtcttt
gacattcatctgagggaaccctcaggagatattttggtttttcttactggaagagaagaa
attgactcggtgatacaacaagttaccgatcgtctacaatctttaccacgtgctgcacct
caaatccttcctcttcctctctacgcgacccttcctgcggaagaacaagccattatattc
gaacctccacctcgagatacccgtaaggttatattcagcaccaacatcgccgaagcgtcc
gtcacaattgacaatatccgatatatcgtcgattctggttttgtcaaattgaaaacattc
aatcctagaactaatatggatgtcctcactgtcacaccatgttctttagcttctgccaat
caacgagctggtagagcaggccgaacttctgccggaaaatgttttcgtctttatccagct
tctatgttacctactcggaatcccagatctcccatgccactacaaaccccaccggagttg
acaagatcagatatcagtttgtatctcttacaactcaaggctttggggatagataatgtt
gccaaatttgattttctcagtccaccatctagcgagatgatgatccgcgctttggaattt
ttgtattgtctaaaagcgattgatgatgaaggaagattgacaagaccgttaggggagagg
atagcggaagttcctttagacccgatgatggctgctatcttgttgaactctgcggcgttc
aaatgcagcgaggagatcttgactatagctgctatgacgtctgtccaagacgtgttcatc
caaccttcgggaggtatgaaagctactatggcggaattggaacgacgaaaatttaccgct
gaggaaggtgatcacttgactcttctcaacgcttacaacgcatttaccagatttggcgca
aaagacaaatcatggtgcggcaaccatcggttaaactttaaagctctttcgagagctatg
agtatccggaaacagttgaaaaagtatttagaaagattcggaataaagatacagagctgt
gagggcgatgtggtaagattgaggaaatgtttagttactgggtatttcaagaacgcagct
aggatgatgccagacggatcatatcgctccgcaagggagaatgccatacttcacgtccat
cctaattccgtaatgttcactagacaaccttcgacgggatgggtgatttatcacgaggtc
gtagagactacgaaaaggtttatgagagatctgaccgttgtggaggaagaatggttggtc
gagttagcaccacattactatcaattcaaaggtgggggaatcaagaaacatttcaaagat
tag
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