KEGG   Tremella mesenterica: TREMEDRAFT_44189
Entry
TREMEDRAFT_44189  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tms  Tremella mesenterica
Pathway
tms03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    TREMEDRAFT_44189
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tms03021]
    TREMEDRAFT_44189
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_44189
Transcription machinery [BR:tms03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     TREMEDRAFT_44189
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     TREMEDRAFT_44189
    U7-dependent histone pre-mRNA processing factors
     TREMEDRAFT_44189
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2 Lactamase_B_3
Other DBs
NCBI-GeneID: 18493593
NCBI-ProteinID: XP_007004989
JGI: Treme1_44189
LinkDB
Position
Unknown
AA seq 738 aa
MYRRNRRFRPAPPQIPQEGEDIPSLKITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAH
PGMGSLPFIDEVDWSTVDAILITHFHVDHAAALPYIMERTNFKDGAGKVYMTHATKAIYG
LTMMDAVRISDQNADNAGRLYTEADVQSSWQNTIAVDYHQDIVVSGGLRFTPYHAGHVLG
ASMFMIEIAGLKILYTGDYSREEDRHLVIAEVPPVKPDVMICESTFGVHTLPDRKEKEEQ
FTTLVSNIVKRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPIFFASGLFQRGMRV
YKTYVHTMNANIRSRFARRDNPFDFKYVKPLKDGRRGDNFKSPCVVMASAQFMSFGLSRE
LLEDWAPGEKNGVIVTGYSIEGTMARTLLGEPDHIESLRGTKIPRRLTVKEISFSAHVDY
GQNSRFIQEVGAQHIVLVHGESSQMLRLRAALRDSYSARGQEVNIHTPRNCEPLTLTFRQ
ERQVKAIGSLAAHRPEHGAIVKGLLVSKDFSYTLLDPKDLQDFTGLSTSTIVQKQSVPLS
VDWSVVRWHLEGMYGEVEDGQEGGNQTLTIMNSIKLVRISETVAELRWESGTSNDMIADS
ALAILLGIDSSPATVKLTSNPHPHSHSHSHTDHSTLQETSEPSPNDEISTLHMFLSAHFG
DVTFHPAGSGEEELTLVVRVDSAQARLDLISMKVESESSELRNRVQGVMEMALATMRPLS
LAFVGCGLEKVEGMKGEI
NT seq 2217 nt   +upstreamnt  +downstreamnt
atgtaccgtcgtaatcgtcgtttccgtcccgcaccacctcaaatcccacaagaaggagaa
gacataccatctttgaaaataacgatgttaggtgcaggtcaagaagttggtagatcatgt
tgtgtaatagaacatagaggaaagaaaatagtttgtgatgctggattacatcctgctcat
cctggtatgggtagtttaccttttatcgatgaagtggattggagtactgttgatgcgatt
ttgataactcactttcatgttgaccatgccgctgctttaccatacatcatggaaaggacc
aatttcaaagatggtgccgggaaagtatacatgactcatgctactaaagccatttacggt
ttaaccatgatggatgctgtgaggattagtgaccaaaacgccgataatgcaggtcgtcta
tatacagaagcagacgttcaatcatcttggcaaaataccatagcagtggattatcatcaa
gatatcgtcgtatccggcggtcttcgtttcactccttatcatgccggtcacgttttggga
gctagcatgtttatgatcgaaatcgctggtttaaagattttatatactggtgattattca
agagaagaagatagacatttggtaattgctgaagtaccacctgtcaaaccggacgttatg
atttgtgaaagtacttttggggttcatactttacccgataggaaagagaaagaggagcaa
tttacgaccctcgtatccaacattgtcaaaagaggaggtagatgtctaatgcccattcca
tcttttggtaacggtcaagaactcgctttattactagacgaatactggcacgatcatccc
gaattacaaaacattcccattttcttcgcttccggtttatttcaacgtggtatgagagtt
tacaagacttatgtacacactatgaacgccaatatccgatcaagattcgctcgtcgggat
aatccatttgatttcaaatatgtgaaacctctcaaagatggtagaagaggagataatttc
aaatcaccttgtgtagtcatggcctctgcacaatttatgagttttggattaagtcgagaa
cttttagaagattgggctccaggtgagaagaatggggttatagttactggttattctatc
gagggtacaatggccagaacacttctgggtgaacctgatcatatcgaatctctccgagga
acgaaaatcccacgtcgactcactgtgaaagaaatatcattttcagcacatgtggattac
ggtcagaattctaggttcattcaagaagtaggagcacaacatatagttttggttcatggt
gaaagttctcagatgctacgattacgtgcggctttgagggatagttattctgctagagga
caggaagtgaatattcatactccgagaaattgcgagcctttaactttgacttttagacaa
gaacgacaagtgaaggccatcggttccctcgcagctcatagaccggaacatggcgctatt
gtaaaaggtctcttagtctcaaaagatttctcatacacccttttagatccaaaagatcta
caagatttcacaggtttatcaacaagtaccatcgtacagaaacaatccgtaccactcagt
gttgattggagtgtggtccgatggcatttagaggggatgtatggtgaagtggaagatgga
caagaaggagggaatcaaactttgaccattatgaactctatcaaattagttcgaatctct
gagacagtagcggaattgagatgggaatcagggactagtaacgatatgattgcggattct
gcacttgctattttactcggtattgattctagtccagctactgtcaagttgacttccaac
ccacatccccattcccattctcattctcacactgaccattcaaccctacaagaaacatcc
gaaccttcaccaaacgacgaaatctccactttgcacatgttcttatccgcccattttggt
gatgtcaccttccaccccgccggatcaggggaagaagaattaactcttgtcgttcgtgtt
gattcagcccaagcacggttagatctgatcagtatgaaagtcgaaagtgaaagttctgaa
ttgagaaatcgagtgcaaggtgtaatggagatggctttggcgactatgagacctttatct
ttagcgtttgtgggatgtggtttggaaaaagttgaagggatgaaaggggagatatga

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