Tremella mesenterica: TREMEDRAFT_45875
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Entry
TREMEDRAFT_45875 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_45875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_45875
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TREMEDRAFT_45875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
18493811
NCBI-ProteinID:
XP_007008019
JGI:
Treme1_45875
LinkDB
All DBs
Position
Unknown
AA seq
287 aa
AA seq
DB search
MPNGSSPPIGSEEEKIYLLIADLLDPDKRETALLELSKKREMYEDLALVLWGGFGVMSSL
LMEIVNVYPAMSPPTLSAHASNRVCNALALLQCVASHSDTRSLFLNAHIPLFLYPFLNTT
SKTRPFEYLRLTSLGVIGALVKQNDNSDVINFLLSTEIIPLCLRIMETGSELSKTVAIFI
VQKILLDDLGLQYICQTYERFYAVGTVLANMVTALVESQAVRLLKHVVRCYLRMSDNPRA
REALKACLPEALRDGTFDGLLKGDNVTRRCLNSLLVNLDDSRRPHEG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatggatcatctccacctatcggtagtgaagaagaaaagatttatttgttgatt
gctgatttgttggatcctgataagagggagactgctttattagagttgagtaagaaaagg
gaaatgtatgaagatttggctttggttttatggggaggatttggcgtcatgtcatcgtta
ttgatggagatcgtcaatgtttatccagccatgtcaccccctacactcagtgctcacgca
agtaacagagtttgcaacgctcttgctcttctacaatgcgtcgctagtcacagcgacacg
agaagtttgtttttgaatgcccatatcccgttgttcctctaccctttcctaaacacgacg
agcaagacgaggccgtttgagtaccttcggttgacgtcgcttggtgtgataggtgcactt
gtcaaacaaaacgacaactcagacgtcatcaacttcctcctttccaccgagatcattccc
ctgtgtctgcgcatcatggaaaccggttccgagttgtccaaaacagtcgccatcttcatt
gttcagaagatcctccttgacgatctcggtcttcaatacatctgtcagacgtacgaacga
ttctatgccgtcggaaccgtcctcgccaatatggtcactgctctggtggagagtcaagct
gtgaggttgttaaagcatgtggtgaggtgttatttgaggatgagtgataatccgagggcc
cgtgaagcgctcaaggcttgcctaccggaagcattgcgagatggtacctttgatggttta
ctcaagggagataacgtcacccgacgttgtttaaacagtcttcttgttaatcttgacgat
agtagaagaccccatgaaggttga
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