Tremella mesenterica: TREMEDRAFT_57751
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Entry
TREMEDRAFT_57751 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Pathway
tms03013
Nucleocytoplasmic transport
tms03015
mRNA surveillance pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_57751
09122 Translation
03013 Nucleocytoplasmic transport
TREMEDRAFT_57751
03015 mRNA surveillance pathway
TREMEDRAFT_57751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_57751
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_57751
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_57751
03012 Translation factors [BR:
tms03012
]
TREMEDRAFT_57751
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_57751
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TREMEDRAFT_57751
mRNA cycle factors
Stress granule specific factors
TREMEDRAFT_57751
Spliceosome [BR:
tms03041
]
Complex C
Other components
EJC/TREX
TREMEDRAFT_57751
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
90S particles
Helicases
TREMEDRAFT_57751
Translation factors [BR:
tms03012
]
Eukaryotic type
Initiation factors
eIF-4
TREMEDRAFT_57751
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
Gp6_2nd
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-GeneID:
18494096
NCBI-ProteinID:
XP_007007545
JGI:
Treme1_57751
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MALNSSDEKLIFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIMRGR
DVIAQAQSGTGKTATFSIAILQSIDSNIRESQALVLSPTRELAVQIQTVVLALGDYMNVS
CHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDEADELLNKG
FKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFV
AVEKEEWKLDTLMDLYDTLTITQAVLFCNTKRKVDWLTEKMREANFTVSSMHGDMVQKER
DAIMAEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPSNRENYLHRIGRSGRFGRKGV
AINFVTTEDVSILRDIEQFYSTQIDEMPMNITDLA
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggcattgaactcttccgacgagaagctcatcttcgagtcttccgaggcagtcacagtc
gctcctacttttgaagcacttaacctcaaagaagacctcttgcgcggaatctatgcttac
aatttcgagaagccctctgctatccagcagcgtgccattatacccatcatgcggggaaga
gatgtcatcgctcaagctcaatcaggtactggtaaaaccgctacgttctccatcgctatc
cttcaatcgatcgattcaaacattcgcgagtctcaggctttggtgttatctcctacgcgg
gaattggctgtacagatccaaacggttgtcctcgctttgggggattatatgaacgtctca
tgccatgcttgtattggaggtaccagtgtcggcgaagacatacgaaagctcgaggctgga
caacaagtcgtcagtggaacccctggtcgggtattcgacatgattcgtcgtcgtaatctg
cgcaccaaagacatcaagatgttgattttggacgaagccgacgagttactgaataaggga
tttaaagatcaaatctatgacatttatcgatatcttcctccggccactcaggtcgtggtc
gtctcggctacactcccacatgatgttttggagatgaccacaaagttcatgactgatcct
attcgaattctcgtcaaacgtgatgagttgacgcttgaaggaatcaagcagttcttcgtg
gctgtcgaaaaggaggagtggaagctcgacactctcatggatctttacgatactctgaca
atcacacaagccgtccttttctgtaacaccaagcgaaaagtcgactggttgaccgagaaa
atgcgagaagcaaacttcactgtcagcagcatgcacggcgatatggtacaaaaagagaga
gatgccatcatggcagagttcaggagtggtcagagtcgcgtgctcatcaccaccgatgta
tgggctaggggtatcgacgtacagcaggtgtcactagtcatcaactatgacctgccgtcg
aaccgtgagaactacctgcatcgaataggccgaagcggtcgattcggtcgcaagggtgtc
gcgatcaactttgtcaccactgaggatgtctctatattgcgagacattgaacagttctat
agcacacagatagatgaaatgccgatgaatattacggatcttgcttga
DBGET
integrated database retrieval system
