KEGG   Tremella mesenterica: TREMEDRAFT_58881
Entry
TREMEDRAFT_58881  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
tms  Tremella mesenterica
Pathway
tms03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    TREMEDRAFT_58881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_58881
   03036 Chromosome and associated proteins [BR:tms03036]
    TREMEDRAFT_58881
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     TREMEDRAFT_58881
Chromosome and associated proteins [BR:tms03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     TREMEDRAFT_58881
    COMPASS/SET1 complex (yeast)
     TREMEDRAFT_58881
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_SPT8
Other DBs
NCBI-GeneID: 18494479
NCBI-ProteinID: XP_007001440
JGI: Treme1_58881
LinkDB
Position
Unknown
AA seq 401 aa
MAQSSSKNPSTAGPSTTGLTKNVVSAFRPAKVFKNLIEAPQTAVKGDPWLTHSPKSITSI
SFDETGERCVTAVGDETFMLWDARKGKKQKTFFSKKYGISLARFTHRSANIIHASTRLED
HAIRYHSMHDNTYLSYFRGHTGRVRSLHMCPTDDAFLSAGDDGTVRIWDLRAPSCRALLN
DVGGTAVAAFDNSGLVFAVACFQTQTIMLYAVSSMDHSPFHYAALIDPALSEISMPPPKP
IYTSIAFSNDGNYLLIGTSSDAHYLVDAFDLVILRRLVGHQGLERDKDGQKGIIPRRGAS
GEEVCFTGDSKWVVSGSADGAVVFWDISPEMGKEKLEVIIGERGKVAELLPTIRLEASAN
AGFGPSRSVRMNPRYAMMGVGGEEFSMWLPAKEEDKPPEGW
NT seq 1206 nt   +upstreamnt  +downstreamnt
atggcacagtcttcttctaagaatccatcaactgcaggaccatcgacaacaggtttgact
aagaatgtcgtctcagctttcagacctgccaaagtgttcaaaaacctcattgaagcccca
caaacggccgtcaaaggtgatccgtggttaacccattccccgaagagcataacgagtatc
tcattcgatgaaacgggtgaacgatgcgtgacggcggtaggtgacgaaacttttatgttg
tgggatgcgaggaagggcaaaaaacaaaagacgttcttttcgaagaaatacgggatatct
ttagcccgtttcactcatcggtccgctaatatcatccacgcttcgacgagattggaagat
catgccatacgttatcattcgatgcacgataatacctatttatcgtattttcgagggcat
acaggcagggtgcgttctctacacatgtgtccgacagacgatgcgttcttgtctgctggg
gatgatgggacggtgaggatatgggatttacgagctccctcttgtagggctctgctcaat
gatgtcggtgggacagcagttgctgcattcgacaactcgggtctggtctttgcggttgct
tgctttcaaacacagaccataatgctttacgctgtctcttccatggatcattctcccttc
cattacgcagcattaatcgaccctgccttatctgaaatctccatgccacctccaaaaccc
atatacacatcaatagcattctccaacgacggtaattaccttctcataggtacctcctcc
gatgcacattatctcgtggacgcattcgatttagtcatccttcgtcgattggtagggcat
caaggtctcgaaagggataaagatggtcaaaaggggataatacctcgaagaggggcaagt
ggggaagaagtttgtttcacaggtgattctaaatgggtagtatcgggttcggcggatggg
gcggtggtgttttgggatataagtcctgagatggggaaagaaaagttggaggtgatcatc
ggagaaagaggcaaggtggcagaattgttgcctacaatcaggttggaagcttctgcgaac
gctgggtttggaccgagtagaagtgtgaggatgaatcctaggtatgctatgatgggtgtg
ggtggagaggagttttcaatgtggctgccggcgaaagaagaagacaaaccaccagaaggg
tggtga

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