Tremella mesenterica: TREMEDRAFT_59259
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Entry
TREMEDRAFT_59259 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03504
DNA polymerase delta subunit 3
Organism
tms
Tremella mesenterica
Pathway
tms03030
DNA replication
tms03410
Base excision repair
tms03420
Nucleotide excision repair
tms03430
Mismatch repair
tms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TREMEDRAFT_59259
03410 Base excision repair
TREMEDRAFT_59259
03420 Nucleotide excision repair
TREMEDRAFT_59259
03430 Mismatch repair
TREMEDRAFT_59259
03440 Homologous recombination
TREMEDRAFT_59259
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tms01009
]
TREMEDRAFT_59259
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tms03032
]
TREMEDRAFT_59259
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_59259
Protein phosphatases and associated proteins [BR:
tms01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
TREMEDRAFT_59259
DNA replication proteins [BR:
tms03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
TREMEDRAFT_59259
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
TREMEDRAFT_59259
MMR (mismatch excision repair)
DNA polymerase delta complex
TREMEDRAFT_59259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
18494626
NCBI-ProteinID:
XP_007001587
JGI:
Treme1_59259
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MPTFAMPSPSTAADRVKLAGRRLTHWIENEHRLVTFREVAREVGCHNNEAKNLLLSHYTS
HPSLYPTYILTGNLLPTSSLTQTQIHHDGPSLPAGSLAHLGNVRIVDMDQVSDDERNSED
GEIDLAGELNDGKLGEMSMGSDEASEDGIKGGIRHDAGGGNEDEEMRVQEVERWGVVLVG
KEKLEEKKTLFRPEVNIHIYSLSPGPINDPAQYLIPSVQLRSMETYHNPQLYGTITGDAF
VSEAKMKDGGMSFDKKSGNSSKDKSKESSKTVTLEKEKVEAVKTSSTKGSKVKDKGKNEK
EKEGEELKVKKELHQNPNKDKSKKKPSLTPNQPNNPVSSHAEPSTTTNPSSSQRQRDDTA
AMEAMMSMDVDMNSDSDQEAEFDSGEKAIKNKSEKRDGDTIVEGGRKRRKVKKSKSEMNE
KGYMVTKDYWSEESISGDDDSSPTLKEVKEENKTQASKMKMKPPPVVAPKRGGSGQSTLQ
GFFKKK
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcccacattcgctatgccttccccctcgacggcagcggaccgcgtcaagctggcaggc
agaagactgacacactggatagagaacgagcatagactggtaaccttccgagaggtcgct
cgggaagtgggatgtcacaataatgaagccaagaatctacttttatctcactacacctcc
catccctccctctacccaacttacatcctcactggaaacctactccctacctcttccctc
acccagactcaaatccatcacgatggtccgtctctcccagcgggcagtctggcacatttg
ggtaacgtgaggatcgtcgacatggaccaagtatcggatgatgagaggaattctgaagat
ggcgagattgatttggctggtgaactgaatgatgggaagttgggagagatgagtatgggc
agtgatgaagcttctgaagatgggatcaaggggggaatacgacatgacgcagggggtggg
aatgaggatgaagaaatgagagtgcaagaggttgaacgatggggtgttgttttagttgga
aaagagaagttggaagagaaaaaaaccttgttcagacctgaagtcaatatacatatatat
tctttatcccccggaccgatcaatgacccagctcaatatctcatcccctctgtacaacta
agatctatggagacatatcataatcctcaattatacggaaccatcacaggtgatgctttc
gtttctgaagcgaagatgaaagatggaggtatgtcatttgataagaaatccgggaattcg
tcaaaggacaaatcgaaggaatcgtctaaaacggttacattggagaaagagaaagtggaa
gctgtaaagacgtcttctacaaaagggtcaaaagtgaaagataaaggcaagaatgaaaaa
gagaaggaaggagaagagttgaaagtgaagaaagaacttcaccagaacccaaataaagat
aaatcaaagaagaaaccgtccctcactcccaaccaacccaacaaccccgtgtcctcccat
gccgagccttcaacaaccaccaaccccagctcatctcaaagacaaagagatgatactgca
gctatggaagccatgatgagtatggacgtggatatgaactctgattcagatcaagaagcc
gagttcgattcaggtgaaaaagctatcaaaaacaagtctgaaaaacgagatggagatacg
atagtggagggaggaagaaaaagacggaaagtcaagaagagtaaatcggagatgaacgaa
aagggatatatggtgacaaaagattattggtcggaagaatctatttctggcgatgatgac
tcgtctccgactttgaaagaagtgaaagaagaaaataaaacgcaagcatcaaagatgaag
atgaaaccacctcccgtcgtagcacccaagagagggggatcgggacaaagtacattacaa
gggtttttcaagaagaaatga
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