KEGG   Tremella mesenterica: TREMEDRAFT_60273
Entry
TREMEDRAFT_60273  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
tms  Tremella mesenterica
Pathway
tms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TREMEDRAFT_60273
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_60273
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TREMEDRAFT_60273
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TREMEDRAFT_60273
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 18495025
NCBI-ProteinID: XP_007002766
JGI: Treme1_60273
LinkDB
Position
Unknown
AA seq 135 aa
MEALIPFTTSGSLVDLVDKKVLVILRDGRKIIGVFRSYDQFANFLMESVVERLYHKMEYA
DRDIGILLVRGENVVAVGEIDLIAEDLIPLRETSVENIMTRITEENTKRDKDQIIKENVL
REYGFVSEGREGDAY
NT seq 408 nt   +upstreamnt  +downstreamnt
atggaagccttgataccatttaccacctctggttctctggtcgatctcgtcgataagaaa
gtattggtcattttaagagatggaagaaagattattggagtgtttaggagttatgatcaa
tttgcaaactttttaatggaaagtgtggtagaaagattatatcacaaaatggaatatgcc
gatagagatataggtatattgctagtgagaggagagaacgtagtggccgtaggagagatc
gatctaatagccgaagatttaatccctttaagagaaactagcgtcgagaacataatgacc
agaataacagaagagaatacgaaaagagataaagatcaaattataaaagaaaacgttttg
agggaatatggttttgttagtgaaggtagagaaggggatgcttattag

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