Tremella mesenterica: TREMEDRAFT_63092
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Entry
TREMEDRAFT_63092 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_63092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_63092
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_63092
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_63092
03016 Transfer RNA biogenesis [BR:
tms03016
]
TREMEDRAFT_63092
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TREMEDRAFT_63092
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TREMEDRAFT_63092
Spliceosome [BR:
tms03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TREMEDRAFT_63092
Complex C
U4/U6.U5 tri-SnRNP related factors
TREMEDRAFT_63092
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
Pre-60S particles
Helicases
TREMEDRAFT_63092
Transfer RNA biogenesis [BR:
tms03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TREMEDRAFT_63092
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Sec10_N
COG4_N
AAA_16
Motif
Other DBs
NCBI-GeneID:
18496131
NCBI-ProteinID:
XP_007005438
JGI:
Treme1_63092
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MVELNTYKESNDAGPSTPKSPKLKKQKRKAVKEDIPVAKIPRITSPVGSQDEPMTGSASD
KDPMETLEEVDPMAALDNQDQEGKKGEEGIKEEEAAVGPLPVTADEFEQEAEREIEASKG
LDGVAVDEGKMKLVHQVRHQVAVPPDYPYIPIAQHKRLDPPARTYKFELDPFQFVATSCI
ERNESVLVSAHTSAGKTVVAEFAIATCLKEGRRVVYTSPIKALSNQKYREFLEIFTDVGL
MTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETII
LLPHTVRYVFLSATIPNSMEFAEWICQTHQQPCHVVYTDFRPTPLQHYLFPAGSEGIYLV
VDERSNFREDNFQKAMAALAAGQGEDSADPNAGKGRKGQKTRKGGALKEKSDIYKIVRLI
MTRSLNPVIIFAFSKRECEALALQMSKLEFNTEDESTTVGQVFENAIGGLSEDDRKLPQI
EALLPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTSV
RKFDGKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKLEPDIAKSMVKGQADRLDS
AFHLGYNMIINLMRVEGVSPEYMLERCFYQFQNSKSVPVLEAQLKKAIAERDSIKIEQEE
SIKDYYDLRSLLSDKGADFQSVITHPSYSLPFLQSGRLIEVRDGDKDFGWGVVVAYNKVT
PPKGRPPVITENDPPQKGYIVDVLIKIASDSTIPRDRSGASILPPPKNDPGVVAIISVLL
STVQSISQFRINLPKMLKGQEEKNVAFKAVNEILRRMPDGPTLLDPIKNMGIQDKSFKDL
VKQISLLEQKIQSLEITSSPLLPQLYDAYSRKQRVSEEIRTLKRRINGVHDVLQLEELKA
RKRVLRRLGFTTHDDVVEMKGRVACEISTGDELMLTEMMFGGVFNPLSPEQCAGLLSCFV
FQEKSEAKVRLKEDLAAPLRVLQETARRIAKVSNESGIALVEDEYVQGFKVEMMDAVLQW
CKGAKFAEICKLTDIFEGSIIRCFRRLQELLRQMGQAAHAIGNTELEEKFGASLQMLERP
NTVVFNPSLYL
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggtagaactcaacacttacaaagagtcaaatgatgctggtccttccacacctaaatca
ccaaagttaaagaaacaaaagcgaaaagcggtcaaggaagatatacctgtcgcgaagata
ccccgcatcacctctcctgtcggatcacaagatgaacccatgacggggtcagctagtgac
aaagaccccatggagacgcttgaagaggtcgatcctatggccgcattggataaccaggat
caagaaggaaagaagggagaagagggtatcaaggaagaggaagcagcagtgggacctttg
cccgtcacggcagatgaatttgagcaagaggccgagagagagatagaggcgagcaaaggg
ttggatggagtggcggttgacgagggtaagatgaaacttgttcaccaagtccgacatcag
gtcgccgtgcctcccgactatccttacattcctatcgctcaacacaaacgactcgatcct
cctgctaggacgtacaaattcgagcttgaccctttccaattcgtcgctacttcttgtatt
gaacgtaatgagagtgtactggtttctgcacatacatctgcggggaaaaccgtggtagct
gagtttgccattgcaacgtgtttgaaagaaggacgaagagtggtttatacatcccccata
aaagctttatcaaaccagaaatatcgagagtttctcgaaattttcaccgatgtcggattg
atgactggtgatgtgacaatcaaccctactgcttcttgtctagtcatgaccactgaaatc
ttgagaagcatgctttatcgtggatcggaagtgatgcgagaggttgcttgggtagttttt
gatgaagtccattacatgcgcgataaagagagaggagttgtatgggaagaaaccataatt
ctcttgcctcacaccgttcgatatgttttcttatcagctaccatccccaactctatggag
tttgccgaatggatttgtcaaactcatcaacaaccatgtcatgtcgtatataccgacttc
cgacctactcctctccaacattacctattccctgccggatcagaaggtatctatcttgtg
gtggacgaacggtccaattttcgtgaagataatttccaaaaagccatggccgcactggct
gcaggtcaaggagaagattcagccgatccaaatgctggaaaaggtcgtaaaggtcaaaag
actcgtaaaggtggtgcgttgaaagaaaaatcagatatttacaaaatcgtcagactcatc
atgacccgttcgttaaaccctgtcatcattttcgctttttcaaagcgtgaatgtgaggct
ttggcattacaaatgagtaaacttgaattcaacacggaggatgaatctactacagtgggt
caagtgttcgaaaatgccataggagggttatcggaagatgatcgcaagttaccacaaatc
gaagcattgttacctttgctcaaaaggggtatagggatacatcatggaggtttattacct
atattgaaggaagtcatcgagattttgttccaggagggattgatcaaatgtttgtttgcc
acggaaactttttcaattggattgaacatgccggccaagacggttgttttcacttcggta
cgcaagtttgacgggaaggactttcgaaatttatcaggaggggaatacattcaaatgtcc
ggtcgagcaggtcgtcgaggtctggatgcaaggggaatagtcatcatgatgtgtgacgag
aaactcgagcctgatatcgctaaaagtatggtcaaaggtcaagcagatcgactagattcg
gctttccacttgggatacaatatgatcatcaaccttatgagagtggaaggtgtcagtccg
gagtatatgctagagaggtgcttctaccaatttcagaattcgaagagtgtacctgtgctc
gaagcgcaactcaaaaaagccatagctgaacgtgactccatcaagattgaacaagaagaa
tcgatcaaagattactatgacctccgatcccttttatctgacaaaggtgccgacttccaa
tccgtcatcacccatccctcttattctctcccctttctacaatccggccgtctcatcgag
gtccgggatggggataaagacttcggttggggtgtagtggtagcatataacaaagtaacc
cctcccaaaggtcgtccgcctgtcattaccgagaatgatcctcctcaaaagggatacatc
gttgacgtccttataaaaattgcttctgattctaccataccgcgagatcgatcaggggca
agtatacttcctcctcccaaaaatgatcctggtgtcgtagccataatcagcgtattattg
agtaccgtacaatctatcagtcaattccgaatcaatttaccaaaaatgctcaagggacaa
gaagagaaaaacgtagcgttcaaagctgtcaatgagattctgagaagaatgccagatggt
ccaactttattggatcctataaaaaatatgggaatacaagataaatctttcaaagatctt
gtcaagcaaatttctttacttgaacagaagattcaatcattggaaatcacatcttctcca
ttattaccacaattatacgatgcgtattctcgtaaacaacgagtatcagaagaaatcaga
actttgaaaagaaggatcaacggggttcatgatgttttacagttggaagaattgaaagca
agaaaaagagttttgagaagattaggttttacgactcatgatgatgttgtggaaatgaaa
ggtcgtgtggcttgtgagattagtacgggagatgaacttatgttaactgagatgatgttt
ggtggggttttcaatccgttaagtcctgaacaatgtgctgggttgttgagttgtttcgtc
tttcaagagaagtcagaggcgaaagtccgtctaaaagaagatttagcagcacccctcaga
gttttacaagagacagctagacgtatcgccaaagtatcaaacgaatcgggtatagcattg
gtggaggatgaatatgttcagggttttaaagtggagatgatggatgctgttttacaatgg
tgtaaaggtgctaaattcgcagagatttgtaagctcacagatatctttgaaggttccatc
attcgatgtttccgtcgtttgcaagagcttcttcgtcagatgggtcaagctgcacatgcc
ataggtaatacagagcttgaagaaaagttcggtgcgagtttacaaatgctcgaaaggccc
aatacggttgtgttcaatccatctttgtacttgtaa
DBGET
integrated database retrieval system
