KEGG   Tremella mesenterica: TREMEDRAFT_67163
Entry
TREMEDRAFT_67163  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K11801  DDB1- and CUL4-associated factor 11
Organism
tms  Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:tms00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tms04121]
    TREMEDRAFT_67163
Ubiquitin system [BR:tms04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     TREMEDRAFT_67163
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd Beta-prop_LRRK2 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_like Beta-prop_RIG_2nd Beta-prop_SCAP WDR54 Beta-prop_NUP159_NUP214 Beta-prop_WDR90_POC16_2nd Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 18497792
NCBI-ProteinID: XP_007001927
JGI: Treme1_67163
LinkDB
Position
Unknown
AA seq 682 aa
MSDEGDLEDLYGIDEDDYNGRYYDLEIRADDDEDEDYEVDDDDEGEEDDDMGDAELVDEF
PITIEPEDHDDGGRVSFHQLAALFQNTTSNQARQNLLAQLLAEPTTDPLPRRESVNNARS
ALRRTLLGAARGGGERRQRDKKWWNEQKEPHPNGVVLLRSGEFGRVGEWGLGKKRPRVGF
AHASGAKRFMRRGLVSPNIIPNTPGTVVASYPSIPYVGQYCGEDYGVFYAATQYFTIHLY
STTQAKKQPKRHPLSSATESTRVEVDDDDDEEDTWGNWSAGRRGMAVEDTSMKKIKTVQG
EEGRWTITDCDADKKGEKMIYSSITPYVHMLYTAQHDSEHVCLDFTGSRRSREEQWGYDS
FGIWSIRFSADGKEVVAGAGSGKIMVYDIESQQRSLSVSGHSDDVNAVCFADETSTNILV
SGSDDGYVKIWDRRSLSSSTPSGVLVGATEGITYTSPKGDGRYVVVNSKDQAARLYDLRK
MRSHSEFTTEPDAVSRYGQPRFDYRNSHYPTPQRLAHPKDCSVMTYRGHAVLRTLIRCHF
SPRESTGQQYIYSGSADGKIHIWSLDGRVVQVLDRALSAPLKDRNNQYTDPSAPQLPRVA
RRDQTEDSYQAYCVRDVSWHGYEPTLMSTCWEMDGGYRRGGTLAKHEWKGLGKGGLRSLE
DWNEKQVAEQAGLSRGWGSRPT
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgtcagacgaaggtgatctcgaagatctgtacggaatcgacgaagatgattataacggt
cgttactatgacctcgagatccgggcagacgacgacgaagacgaagactatgaagtggac
gatgatgatgaaggtgaagaagatgatgatatgggggatgctgaactagtagatgagttc
ccaatcaccatcgaacctgaagatcacgatgatggtggtcgagtcagttttcatcaattg
gcagctttgtttcaaaatactacttccaaccaagccagacagaatctcttagctcaatta
ctagccgaacctaccactgatccactccctcgaagggaatccgtaaacaatgccagatca
gcattgaggagaacgttgttgggtgcagccagaggaggaggagaaaggaggcaaagggat
aagaaatggtggaacgaacaaaaagaacctcatcctaatggagtggtattactaagatcg
ggggaatttggaagggttggggagtggggattgggtaaaaagagacctagagtcgggttt
gctcatgcatctggagctaagagattcatgagaagaggtctggtatcacctaatatcatc
cctaatactccaggcactgtagtagcttcatatccttcaataccttatgtaggtcaatat
tgtggcgaagattatggtgtcttctacgccgccactcagtattttaccattcatctttat
tccaccacacaggctaagaaacaacctaagcgacaccctttgtctagtgcgacggagagt
acgagggtggaagtggatgatgatgatgacgaagaggacacttgggggaattggtcggct
gggagaagagggatggcagtggaagatactagtatgaagaagattaagactgttcaaggg
gaggagggaagatggactatcactgattgtgatgcggataagaagggggagaaaatgata
tattcctctatcacaccttatgtgcacatgctatacaccgctcaacatgactcggagcat
gtatgtctcgactttacaggctctcgaagaagccgcgaagagcagtggggttatgacagt
tttggcatctggagcatcaggttctcagccgatgggaaagaagtcgtggctggtgcaggt
agtggaaagatcatggtatatgatatcgaaagtcaacaaagatctctgagcgtctcgggt
cattcggatgatgtcaatgccgtatgcttcgcagatgagacatctaccaatatcctagtc
tccggttccgatgatggctatgtcaaaatctgggatcgacgttcattgtcttcgtcaacg
ccttccggtgtgttggtaggtgctacagaaggaatcacctatacttctcctaaaggggat
gggaggtatgtcgtggtgaattcaaaggatcaagctgctaggttgtatgatttaaggaaa
atgagaagtcatagtgaatttactacggaacctgatgctgtgtctaggtatggtcaaccg
agatttgattatcggaactcacattatcccacaccacaaagattggcgcatccgaaagat
tgtagcgtcatgacatatcgtggtcatgctgttttacgtactttgatccgatgtcatttc
tctcctcgagaatctacgggacaacagtatatttattcgggaagtgccgatgggaaaatc
catatttggtcccttgacggtcgtgtggtacaagttctggatcgagccctgtcagctcct
ttgaaagacagaaacaaccaatacacagatccctccgcacctcaactcccacgcgtcgct
cgtagagaccaaaccgaagattcttaccaagcctattgcgtccgcgacgtgagttggcac
gggtacgaacctaccctcatgtccacctgctgggagatggatggaggttacagacgagga
ggtactctggcgaaacatgagtggaagggacttgggaaaggcggattacgttcgttggag
gattggaatgaaaaacaagttgcggaacaagcaggattaagtagagggtggggttctcgg
cccacctag

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