KEGG   Tremella mesenterica: TREMEDRAFT_67471
Entry
TREMEDRAFT_67471  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14402  cleavage and polyadenylation specificity factor subunit 2
Organism
tms  Tremella mesenterica
Pathway
tms03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    TREMEDRAFT_67471
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_67471
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     TREMEDRAFT_67471
    U7-dependent histone pre-mRNA processing factors
     TREMEDRAFT_67471
SSDB
Motif
Pfam: Lactamase_B_6 CPSF100_C Beta-Casp RMMBL
Other DBs
NCBI-GeneID: 18497836
NCBI-ProteinID: XP_007001971
JGI: Treme1_67471
LinkDB
Position
Unknown
AA seq 944 aa
MITLTPLSSSATSSSTSEPLCYLLEVDDARILLDMGQSDYTAASSHSSYEYENKVRELAP
TLSLVLLSHSQTRYLSLYPFARARWGLQCPVYATQPTVEMGRVVCLSEVYSWRSEHAVDD
TSDHSANHSSGGSPDKGKQPLRGPFVPTVEEVHEAFDWIKAVRYNQPLHLDGGLSHLLLT
PFRSGHTLGGTLFKIRSPTSGTVLYAVGMNHTGERHLDGMVSGQGGPSGYEEGVLRPDLL
IVEGSRATVVNPKRRERETALIDVVSSTLEASRSVLMPVDPSPRLLELLILFDQHWTFKQ
IPPEKRNHLYVPKEEAERQWPYPLCLVSRTGHDMASFARSLIEWMGGIVREAGGEEVVDD
LPTGGKKGRRKPIGLGNSEYGLLDFRHVRFFASPMDLLQGLGLNRPKLVLAIPPAMNHGP
SRWLFTAMGSVEGNVILLTSTGQDQSLARDLYNEWEKSQPSGCKWGEGKIGKLHRLDGSM
TVELNSKVPLIGAELEAHVEAERLEKEREAAHQAALNRSERMLEADDLESDSDSDTESLD
AATGGLVRNRAEGANAYAGDGEDVRTMSFDIFVKGQQMRTGRGTEGGMARFRMFPFLERR
GRKIDDYGEGLDIGQWVRKGKEIEEEGETEEVREAKRRKEMDEEKHQDAPEPPSKYVTEI
KTVELHAYVFFVDMDGQLDGQALKTVITDLQPRKIIIVRSTPQATENLLDYFRSASLITH
DIHIPALYQTLRIGEHVQSYSLILGDSISASLAGKWSKFEGFEITMVDGKIAFSAGSTVP
HLETSNAVIEPAPKLEIDPSKDDNTTLPDSTQEVQPVTGQELSEDIEMTVKAEPIDPTPQ
EITQKPTRNVQTAVPLPTSLFVGDLRLAVLKNKLASLNIPAEFAGEGVLVCGPGVSTPET
AKAGSLVAVRKVGTGEIVLEGTVGKVYFDVRKALYGSFAMVAAA
NT seq 2835 nt   +upstreamnt  +downstreamnt
atgatcaccctcactcccctgagctcttcggccacttcatcctccacctccgaaccatta
tgctacctcctcgaggtggatgacgcccgtatactgctggacatgggtcagagtgactac
actgctgcctcctcacactcttcatacgaatacgagaacaaagtccgcgaactcgctccc
accctctcgctcgtactcttgtctcactctcaaacccgatacctctcactgtatccgttt
gctagggccagatggggtcttcaatgtccagtatatgctactcaacccaccgtcgagatg
ggtcgcgtggtttgtctttccgaggtgtattcttggcgctccgaacatgctgtggacgac
acatcggatcattccgcaaaccactcgtcaggtggatccccggataaagggaaacaacca
ctcagaggaccgttcgtacccaccgtggaagaggtgcatgaggcgtttgactggatcaaa
gctgtccgttacaatcaaccactccatctcgatggcggtctgtcacatctgttgctcact
ccgtttcggagtggacacacgctaggagggactctgttcaagatccgttcacccaccagt
gggacagtgctctacgctgttggaatgaatcacacaggtgaaagacatctggatggtatg
gtcagcgggcaaggaggtccttcaggttatgaagaaggagttcttagacctgacttgctc
attgtggaaggtagcagagccactgttgtcaatccaaaacgtcgagagagagaaacagct
ttgatagatgttgtctcgtccacacttgaagcttccagatctgtattgatgcccgtcgac
ccgtcccctcggctactagagcttttgatactgttcgatcaacattggactttcaagcag
attccccctgaaaagagaaaccatctctacgttcctaaagaagaagccgaacgacagtgg
ccgtaccctctctgtcttgtcagtcggacggggcatgacatggcttcctttgctcgaagt
ctgatagaatggatgggcgggatcgttagagaggcaggtggagaggaagtcgtcgatgat
cttccaactggaggcaaaaaagggagaagaaagcccatcggtttgggaaactcagagtat
ggactgcttgacttcagacatgtccgtttctttgcctcgcctatggatttactgcaagga
ctcggactgaacagaccgaagctggtcttggccattccgcccgctatgaatcatggtccg
agtcgatggctcttcacagcgatgggcagcgtggagggaaatgtgatactgctgacttcc
acgggacaggatcagtctctggcgcgggacttgtataacgagtgggaaaaaagccaacct
tctgggtgtaaatggggtgaagggaagattgggaaattgcatcgtctagatggaagcatg
acagtagagctcaactcgaaagtcccattgattggtgccgaacttgaagcccatgtagaa
gctgagcgtctggagaaagagcgtgaagcggcacatcaggcggctctcaaccgatccgag
cgtatgctcgaagccgacgatctggaatctgactccgattctgataccgaatctttagac
gctgcaaccggaggactggttcgaaatcgcgctgaaggcgctaatgcctatgctggggat
ggtgaagatgtgcggaccatgtcgtttgatattttcgtcaagggtcagcaaatgcggact
gggagaggaacagaaggtggtatggcacgtttccgaatgttcccttttctggaaagaaga
ggaaggaagattgatgattatggtgaaggtttggatattggacaatgggtgcgaaaaggc
aaagagattgaggaagagggagagacagaggaagtgagagaggcgaagagaaggaaagag
atggacgaggagaaacaccaagacgcacctgaacctccctcgaaatacgtcaccgagatc
aagacggtagagctccacgcctatgttttctttgtcgatatggacggtcaattagatgga
caagctctcaaaactgtaataacagatcttcaacctcgaaaaatcataattgttcgatcc
acaccacaagccacagaaaatcttctcgactacttccgttcagcttcacttatcacacat
gacattcatattcccgcactctatcagactttaagaataggtgaacacgtgcaatcatat
tcgctcatattaggagatagcatctccgcttctctcgctggaaaatggtccaagttcgaa
ggatttgaaatcaccatggtagatggcaagattgctttttctgcaggatctacagtccca
catctcgaaacttcaaatgcagtaatcgaacctgctccgaaactagaaatcgatccttcg
aaagatgacaacacgaccctcccagactcaacccaggaagttcaacctgtaaccgggcaa
gaattaagtgaggatatcgaaatgacggtcaaagctgaacctatcgatccaacaccacaa
gaaatcactcagaaacccactagaaatgtgcaaactgcagtaccgctccctactagttta
tttgtgggggatctccgattagctgtcttgaagaacaaattggcatcattgaacatacct
gcagaattcgcaggtgaaggtgtgttggtttgtggacctggggtaagtactcctgagacg
gcgaaagcggggagtttggtggctgtgaggaaagtgggcactggggagatcgtgttggaa
ggaacggtcgggaaggtttatttcgatgtgcgcaaagctctttatgggagttttgccatg
gtcgctgcggcgtaa

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