Tremella mesenterica: TREMEDRAFT_69477
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Entry
TREMEDRAFT_69477 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
tms
Tremella mesenterica
Pathway
tms03030
DNA replication
tms03410
Base excision repair
tms03420
Nucleotide excision repair
tms03430
Mismatch repair
tms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TREMEDRAFT_69477
03410 Base excision repair
TREMEDRAFT_69477
03420 Nucleotide excision repair
TREMEDRAFT_69477
03430 Mismatch repair
TREMEDRAFT_69477
03440 Homologous recombination
TREMEDRAFT_69477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tms03032
]
TREMEDRAFT_69477
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_69477
Enzymes [BR:
tms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TREMEDRAFT_69477
DNA replication proteins [BR:
tms03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
TREMEDRAFT_69477
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
TREMEDRAFT_69477
MMR (mismatch excision repair)
DNA polymerase delta complex
TREMEDRAFT_69477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
18498149
NCBI-ProteinID:
XP_007006270
JGI:
Treme1_69477
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MVEPSSKKRKVETNGHAPLKKQESFSSVLQQLEAEEDAGGESIETSAAWPRPPLPRLRPQ
TDSIAFQQIEIEEASEAKLGPTLRLFGVTQNGNSVLAHIHGFKPYFYVAAPSGFLNKDLD
PLKDMINSTVTSLGPAVHSCIVVNRKSLWGYRGDDQVPFIKITCTDPKNLPKVKGAFERG
QIDFNGLFPPEIMTYESNIAYTMRFMIDTGVVGMNWVELPGGKYEVLEGSEKRSLCQIEV
MAEYKDLISHAPEGEWLKIAPLRIMSFDIECAGRKGIFPEAHIDPVIQIAAMVTRQGESK
PFVRNVFTLNTCAHIVGSQVLEFKDEKQLLIEWRKFVQEVDPDMVIGYNIANFDLPYLLD
RAKALKAQEFPFLSRLKGQKTEVKETHFSSKAYGQRDSKAVNMEGRLQLDMLQVMQRDYK
LRSYTLNAVCAQFLGEQKEDVHHSIITELQNGTADSRRRLAVYCLKDAYLPQRLLDKLMS
FVNYTEMARVTGVPFNYLLTRGQQIKVISQLFRASADSGYIIPAMKSEGSDEQYEGATVI
EPTKGYYDVPIATLDFASLYPSIMMAHNLCYTTLLDKGTIERLKLVEGEDYVHTPNNDYF
ATTKRRKGLLPTVLRNLLDARKRAKQDLKVEKDPFRRAVLDGRQLALKISANSVYGFTGA
TVGKLPCLAISSSVTAFGRQMIEFTKQQVEAEFCVANGYENDAKVIYGDTDSVMVRFGTP
DLATAMRLGAEAAELVSAKFIKPIKLEFEKVYFPYLLISKKRYAGLYWTKTEKYDKMDTK
GIETVRRDNCRLVSTVIETCLFKMLIDRDVKGAEDYVKSTISDLLQNKIDMSQLVITKAL
AKADYAAKQAHVELAERMKKRDAGSAPALGDRVAYVIIKGIKGAAAYEKSEDPLYVLEHN
VPIDTRYYLENQLSKPLMRIFEPILGEKANTLLSGEHTRTIQIATPTVGGLMKFAVKTVT
CLGCKTPLRSNKESAVCINCRSKLPELYAKQVAQTSTLQIDFARLWTQCQRCQGSLHQDV
ICTSADCPIYYRRTARQKEVAASVSQLDRFDKEEVW
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggtcgagccatcgagtaagaagcgtaaggttgagacgaacggtcatgcccctttgaag
aagcaagagagcttctcgtcggtgctacaacagctggaagctgaggaagatgcgggtgga
gaatctatcgagacgagcgctgcttggccaaggccgccactaccgcgattacgaccacaa
actgactccattgcctttcagcagattgaaattgaagaagccagtgaagcgaagcttggt
ccgacgttacgcctgttcggtgtgacccagaatgggaattcagttctggctcatattcac
ggcttcaagccgtacttctacgtcgctgccccgagcggctttctcaacaaagaccttgat
ccgctgaaagacatgatcaatagtactgtgacatctctaggtccagctgtccatagctgt
attgttgtgaatcggaagtcgctttggggctaccgaggagatgatcaggtacccttcatc
aagatcacatgcaccgatcccaaaaatttgccgaaagtcaaaggtgctttcgagagaggt
cagatcgacttcaatggactgttccctccggaaatcatgacgtatgaaagcaacatcgct
tacactatgcgtttcatgattgatactggggtggtgggaatgaattgggtggaattacca
ggagggaaatatgaggttcttgaaggctctgaaaagcggtcattgtgccaaattgaggtc
atggcggagtacaaagacctcatatcccacgcaccagaaggcgaatggttgaagatcgcg
cccttacgaatcatgagctttgatatcgagtgcgccggtcggaagggtatcttcccagag
gcgcacatagatccggtcattcaaatagcggcgatggtaacgcgtcaaggagagagcaag
cctttcgtccgaaatgtattcaccctcaatacgtgtgcccatatcgtcgggtcgcaggtg
ttggagttcaaggacgaaaagcaattattgatagagtggcgcaagtttgtgcaggaggtg
gatcctgacatggtcattggttacaacatcgccaatttcgacttgccatacttgctggat
cgggccaaggcattgaaagcacaagagttcccgttcctcagccggcttaagggtcagaag
actgaggtcaaggagacacatttttcgtcaaaagcatatggtcaaagagactcaaaagct
gtcaatatggaaggccggctacaactcgatatgctccaagtgatgcagagagattacaaa
ttacggtcatacacgctcaacgccgtgtgtgcacaatttctaggagagcaaaaggaagac
gtacaccactccatcatcactgaactgcagaatggtacagccgactcacgccgtcggctg
gcggtttactgtctcaaggacgcttatcttcctcaaaggctgctcgacaaactgatgtca
ttcgttaattacaccgaaatggctcgtgtaaccggtgtgcctttcaattaccttctcact
cgagggcaacagatcaaagtcatttcacagctgttccgtgcctccgcggactctggatac
atcatcccggctatgaagagcgaaggatccgacgaacagtacgaaggagcgaccgtcatc
gagcccacgaaagggtattacgatgttcccattgccactttggattttgcctcactatat
ccatcgatcatgatggcgcataacctgtgttacacgacactgctggacaagggcacgatt
gaaagattgaagctggtagagggagaagactacgtgcatacgcccaataatgattatttt
gcgacgaccaaacgacgaaaagggctattgccgacagtactacgaaatcttttagacgct
cgaaaacgggccaaacaagatctcaaagtcgagaaagatccttttcgacgtgctgtcctt
gatggtcgacaattggccctgaagatctcagccaattcagtgtatggtttcaccggtgca
acagtgggaaaactgccttgtcttgccatttcatcttccgtcacagccttcggtcgacaa
atgatagaattcaccaaacagcaagtggaggcggagttttgcgtcgcaaatgggtatgag
aatgatgccaaggtgatatacggtgacactgattccgtcatggttcgttttggtacccct
gacttagcaaccgctatgcgtctgggggctgaagcggcggagctagtctccgccaaattc
ataaagcctatcaaactggaattcgaaaaggtgtattttccatacttgttgatcagcaaa
aagagatatgcgggtctgtactggacaaagacggagaagtacgataagatggatacgaag
gggatagagaccgtgagaagggacaattgtcgattagtgtcgacagtcatagagacatgt
cttttcaaaatgcttatagaccgtgatgtgaaaggcgcggaggattatgtgaaatcaact
atttcggatttgttacaaaataaaatcgacatgtcgcaactggtcatcaccaaagctctg
gctaaagctgactacgcggcaaaacaagcacatgtagagctagcagaaaggatgaagaag
cgtgatgccggttctgccccagcattaggagatcgagtagcctacgtgattatcaaaggt
atcaaaggagctgcagcctatgaaaaatcagaagatcctctttatgttctagaacataat
gtaccgatagacacaagatattatttagaaaatcaattaagtaaacctttgatgagaatc
tttgaacctatcttaggggagaaagcgaatactttattatctggagaacatacgaggact
attcaaattgctactccgacagttggaggattgatgaagtttgcagtgaagacggtcaca
tgtctagggtgtaagacacctttgaggagtaataaagaaagcgcggtatgtatcaattgt
cgatctaaattacccgaattatatgccaaacaagtcgcacaaacctccacgttacaaatt
gatttcgcaagattatggacacaatgtcaaagatgtcaaggatctttacatcaagatgtt
atttgtacatctgccgattgtcctatatattatagacgtaccgctcgacaaaaagaggta
gctgcgagtgttagtcaattggataggtttgataaggaagaagtttggtga
DBGET
integrated database retrieval system
