Tremella mesenterica: TREMEDRAFT_69905
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Entry
TREMEDRAFT_69905 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_69905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_69905
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TREMEDRAFT_69905
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TREMEDRAFT_69905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Poty_PP
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
18498217
NCBI-ProteinID:
XP_007007210
JGI:
Treme1_69905
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MALRKLQAEIDKTLKGVSQGVEAFESTFDKLNHATNSAQKDKLENDLKTQIKKLQRMRDQ
IKAWLGSSEIKDKSALLDNRKLIETQMERFKALEKEMKMKAFSKEGLIAQSKLDPAEKAK
RDFIEWIGTTVDELSRQIEATEAEVETLQATKKKKSGADRLGELEQLNERRQWHIGRLEV
VQRMLENGQLTVEQVEPIQEDVKYFVETNTEEDFEFDNGIYDELNLVDEEDYLQDFSHHD
EMSNLDSASLLDPSDAPKTPAKEEKDKRSVSGSKPTSQTIPEEAPPSPILTKRSVSRKTT
QESAKAEPVKLPPKPEVPPVPPIPTAATAPAPRASLPPIRYAAAAAAAVAPSSASASIPS
VPAPANPSSVSSTSTGPTHEPVAKLPEPAAVQPTQILEQENGPVPTTESPAVSSIGVPPT
ESPSLTNGLPPPPPGLSTSLSPVPQQPNPSHVVSSSFNGPQPPITPAISTASGGNVFPQQ
AQQAGSSRTPSSSYASGASPSAPQGVLGNLMQSFDMAKELSQHRANDLNELHSALDASFA
NAPHPSDGEPPRYYHPQNPIRTPSYYPQAQLPIFDDKTHVSRLDQDVLFFLFYYHPGTYE
QWLAAQELKSQSWRFHKQYLTWFQRAYNPQAITEDYEQGGYVYFDWENSWCQRKKSDFRF
EYRWLSDH
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggctttaaggaagttacaagcggaaattgacaagaccctcaagggtgtctctcaaggt
gtcgaggcttttgaatcaacatttgacaagctcaaccatgccaccaattccgcccagaag
gacaagctggagaacgatctcaagacgcagatcaaaaagctgcaacggatgagagatcag
ataaaggcatggttgggaagttctgagattaaagacaagtcggccctactggataaccga
aagctgatagagacgcaaatggaacggttcaaagctctcgaaaaggagatgaagatgaaa
gctttttcgaaagaaggactcatcgctcaatccaaactcgaccctgcggagaaggcgaag
agagatttcatcgagtggataggaacaaccgtcgatgaactctcacgacagatagaagcc
acggaggctgaggtggaaactctgcaagcgaccaaaaagaagaagtctggtgccgacaga
ctaggggagttagaacagcttaacgaacgacggcaatggcacattggacgtttggaggtg
gttcagcggatgttggagaatggacaattgactgtagagcaagtggaaccaatacaggag
gatgttaagtactttgtcgagactaacacggaagaagatttcgaattcgacaatggtatt
tacgacgagctcaacctggtggacgaagaagactacttacaagacttcagtcatcacgat
gaaatgtctaacctcgattccgcttcccttctcgatccaagtgatgctcctaagacaccg
gcgaaagaggaaaaggacaagagatcggtctcaggtagcaaacccaccagtcaaacgata
ccagaggaagctccaccaagtccgatattaacaaaacggtcagtatcacggaagaccaca
caagaatcggcaaaagcagagccagtcaaactaccccctaaaccagaggtgccgccagta
cctcccataccgacagctgccacagctcctgctcctcgtgcctcactccctcctattcga
tatgcagcagcggccgctgccgctgtggctccttcaagcgcatcagcatccatacctagc
gtccctgcacctgcgaacccatcctcagtatccagcacctcgaccggacctacacacgag
cctgtcgcaaagcttcccgagcctgcggctgtccaaccgacgcaaatactggagcaggaa
aacggtcctgttcccactaccgagagtccagccgtcagttccataggcgtgccccctaca
gagtcgccatcactgacaaatggtttaccaccacctccaccgggactctcaacgtctctc
tcaccggtacctcaacaaccgaacccatcacatgtcgtttcctcatcattcaatggaccc
caaccaccaatcactcctgcgatctctactgcctcagggggcaacgtgtttcctcaacaa
gctcagcaagccggatcatcacgaacaccttcatcgtcgtatgccagcggtgcaagtcct
tctgctcctcaaggcgtacttggcaatctgatgcagagctttgacatggcaaaagagctg
tcacaacaccgtgcaaatgacctaaatgagcttcactccgcattggatgcgagctttgcg
aatgctcctcatccatcagatggagaaccaccaagatattaccatcctcaaaatcccatc
cggacaccgtcatactatccccaagcccagttaccgatatttgacgataagacccacgtc
agtcggttagatcaagatgtcttgttctttctcttctattatcatcctgggacatatgag
caatggttggcagctcaagaactcaaatcccaatcatggcgatttcacaaacaatatctc
acttggttccaaagagcatacaatcctcaagccatcacagaagactacgagcaaggtggt
tatgtctactttgactgggagaacagttggtgtcagaggaagaagagtgatttccgattc
gagtaccgatggttgtcggatcattga
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