Tremella mesenterica: TREMEDRAFT_70349
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Entry
TREMEDRAFT_70349 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tms
Tremella mesenterica
Pathway
tms03022
Basal transcription factors
tms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TREMEDRAFT_70349
09124 Replication and repair
03420 Nucleotide excision repair
TREMEDRAFT_70349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_70349
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_70349
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TREMEDRAFT_70349
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TREMEDRAFT_70349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GlfT2_domain3
Motif
Other DBs
NCBI-GeneID:
18498293
NCBI-ProteinID:
XP_007008142
JGI:
Treme1_70349
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MSSSTDVTLQFSAELKKVPGVLSVTPTAVAWVPSVPGTMDRQSQNLNRAIAMFASKPTSP
RISLKITFKDDIPSGGLTFTFTSPTSSSDRTSVQDHLIPYITANRAASAPTPAGPSTPLT
GSTPGTPSAVAKGKRKADETPDAPVRTQGLEFKIRRRVLEKNPNLKLLHRELVLGGQIQE
EEFWDGREALLHAEEMEYAQRPGRPSRLLDDRFDLTGTKKSAVTVGGTGVGVKKVESGPV
VLNITKELTREIFEEFPVVQDAYAKFVPGISEAEFWSRYFTSQLWEQHRASVRKSTAEEG
AKRRDPIFDQYLEEPDWDAQPKHAPSDQIERFLDLSATEEDHGEAITVRDVTMQAGRERS
SLPLMRRFNDHSQKLLRAGRDPSRLSESTLPEDVNIYNEIDLEDLHSPAASGTITLQVRD
EPIRKDGKEKVLLPGKTPEELADLAERETRRILNWTPDLSSVSLQPPAGGWQANRLASTS
TGDELQQAEAYEKYAAQRDGQSAAIQVVKDMYVASNLERVELPAIPDELLHQIRSCHNAA
TEFLRQYYSATLPNPSNPNLTPAAVSARSTRATKMAQYLRGTEAKVNAVVHTAQIAGVDP
ERVRAVLSCTVGAVRLALIREERRKGFS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatcaacagatgtcactcttcaattctctgcagagctcaagaaagtgcccggg
gttctgtccgtcacgcccaccgctgtcgcctgggttcccagtgtaccgggcacgatggat
cgtcagtcacaaaacttgaatcgggctattgcaatgttcgcatccaaacctacctcccca
aggatatccctcaagatcactttcaaagatgatatcccctcgggtggtctcactttcaca
ttcacctctcctacctcctcctctgatcgtacgtctgtacaagatcatcttatcccttac
atcacagctaatcgagctgcctctgcccccaccccagcaggtccttcgacccctttaaca
ggctctacacctgggacaccatcggctgtggcaaaaggtaaacggaaagccgatgagacc
cccgatgcgcctgtgagaacccaaggattggaatttaaaatcaggaggagggtgttggag
aaaaatcctaatttgaaattgttacatcgtgaactcgtcttgggtggtcagattcaggaa
gaggagttctgggatggtcgggaggccctacttcacgcagaagaaatggaatacgctcaa
cgaccaggtagaccttctcgtctactagacgatcgttttgacctcactggaacgaagaaa
tccgctgtgacagtgggaggtacaggtgtgggagtgaaaaaagttgagagtggaccggtt
gtcctgaacatcactaaagagctcacgagggaaatctttgaagaatttccagtcgtccaa
gatgcctatgcgaagtttgtaccaggtatatccgaggcagagttctggtctcggtacttt
acttcacaattatgggaacaacaccgagcctctgttcgaaagtccacagcggaagaaggg
gcgaaacgccgagaccctatatttgatcagtacctcgaggaaccggattgggatgcacaa
ccgaaacatgcaccttccgatcagatcgagcggtttcttgatctgtcagctacagaggag
gatcatggcgaagccatcactgtccgcgacgtaacgatgcaagctggcagagaaagaagc
tctttaccacttatgagacgattcaacgatcattcgcaaaaactcttgagagcagggcgg
gatccaagtcgattaagtgagagtacacttccggaagacgtgaacatttacaacgagatt
gaccttgaagatctacactctccagctgcatcaggcactataacgcttcaagtacgagat
gaaccaatccggaaggatggaaaagaaaaagttcttctgcctggtaagaccccagaggaa
ctcgccgatttggcggagagagaaactcgccgtatcctcaattggacacccgatctatct
tccgtctctcttcaacccccggcaggaggatggcaagccaaccgacttgcatcaacttcc
acgggagatgaacttcaacaagcagaagcttacgaaaaatatgcagctcagagagatggt
caaagtgctgctatacaagttgtcaaggacatgtatgtggctagtaatttggaaagggtg
gaattgcccgcaataccagatgaactcctccaccaaatccgatcttgtcacaatgccgcc
actgaatttctccgtcaatactattctgccacccttcctaatccttccaaccctaacctc
actcctgcggccgtatcagccagatcgacccgagctactaaaatggcacaatatctccgt
gggacagaagctaaagtaaacgctgtggtacataccgctcaaatcgccggtgtggatcca
gagagggttagagctgttttgagttgtacggttggagcggtgaggttagctttgatcaga
gaagagaggagaaaggggtttagttga
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integrated database retrieval system
