Tremella mesenterica: TREMEDRAFT_70643
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Entry
TREMEDRAFT_70643 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K18664
antiviral helicase SLH1 [EC:
5.6.2.6
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_70643
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TREMEDRAFT_70643
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TREMEDRAFT_70643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
AAA_19
DEXQc_Suv3
DUF4277
Motif
Other DBs
NCBI-GeneID:
18498353
NCBI-ProteinID:
XP_007002001
JGI:
Treme1_70643
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MAKFLDRRAMSPPMTYLGRLQLCLSDCKVTSTYNALVALLSSKQSDEDIQSELVEILGFE
GDGLSLVEEILKPGVRESLKDKTNGRSGPTYNPTTRMTLSAQPRGKKEKKKHVDISDIVG
SAADIERRLQEQLEKPKPMFSDGPARVVEKEKLPHVYASTTTAGVQISMGGQFSLPAGTT
RELNDTYEEVVVPPNKPIPPRGSERPVRINELPPLAKGCFPSYVSLNRMQSIIQPTAMNT
NENLLICAPTGAGKTDIAIMSIIRVLQSHLLETPQGRPHPSGFNLDLSVFKIIYVAPMKA
LASEITRKFGKRLAWLGVKVRELTGDMQMTRQEIAETQVIVTTPEKWDVVTRKPTGEGEL
ASRVKLLIIDEVHLLNEERGAVIESIVARTLRQVESSQSVIRIVGLSATLPNYIDVGDFL
RVNRYTGLFFFDASFRPVPLEQHFIGVTGKPRSLQSIKNTDQVVFDKVSQLVEHGHQVMV
FVHARKETVKAAESLREMSKEEAMVSFFECIDHPKFEFYRREIATSRNKEMKDLFNAGFG
IHHAGMLRSDRNMMERMFEDGAIKVLCCTSTLAWGVNLPAHAVVIKGTQVYDSSKGSFVD
LSVLDVLQIFGRAGRPGYETSGVGYICTTQDKLDHYLRNIMSQLPIESKFIGGMVDSLNA
EISLGTIANVQEAIQWLGYTYLFVRMKREPFVYGMPHDEGKDDPQLGNKRNELIIQAARR
LSEARMIRFDEMAGALAITDLGRIAAKYYLKHSTVEVFNGLFKPEMKNADLFDMLCQATE
FDQIQVRESEQEELQAIVESAHRVLEVRGGPSDRHGKVNILLQAHISRVYLEDFALVSDS
AYIAQNAARIIRALIEWAFSRDWANNVHHLINLSKSIEKRSWPFALVLNQFQLKDETLYH
IIQYAEDVPVEDLRSMSAREIGDMIKLNEANGRAVLDAAWALPTVETSYSLRPLAHDLLK
IQVIVRPNFRWNARLSATAEPFYVWIEDSTGLEMLQWRSIKLRPSTTSLELEFIIPFTDD
LPESITIVSTSDRWFGSDSQVVVPLIDLVMPTPVDEPTPVLDVPFLQISCLDDYNLEHAY
RSYMTTLTSIQTQAFWSFYHTQKNVFLSAPVGSGKSFLGEVAIWHAFRHNRDAVVLLILP
QKEAVKEVTARLRRLCPRAKDIQVNTILGPHDVDSFSTSERTIAIATPSALLAAEPKVLQ
KSLMKLSLTVFDDLHLLNPSYELIITKILSLAKPARTRLIGLSSSLIDPTSLADWLSVDT
AFRFNFLPRDRGISLSVHTKTFTIPHSTTLLKTMVKPTYDILKSSPGQAIIFIPSRPMCR
VIATDLVRQSGTEMDLNGFLSVPREAVEPYAQRIRDTNLYEPLLHGIGYVIPDMSGKDLE
MVFELFVSGLIKALLVPREMAWKLPVRSTVVILLSAQYVEYDRISNEQRVVNYSPVELVK
MQGHAIPSPFPIGGESKMFIMCQQEQSLFINRILSSGLPLESFIPSLLKGERSESEETEL
KNLLKPRPPPLRVQANLSKRIDLRKRDMMDLLGWTYLADRIKANPSYYDVGNGEPERVVS
DWIDRWFVIRRAKGEEGDGMTSSGSGGKGKGKGNGKINGGEGKENGMTSEQTSEEIDDVE
DSEMDVTVEDRDHDDSGIGT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagttcttggaccgtcgggctatgtcacccccgatgacttacctgggacgtcta
caactctgcttgagcgactgcaaagtgaccagcacatacaacgctttggtagctctctta
tcgtcaaaacaatcagatgaggatatccaatctgagctcgtggagattttgggttttgaa
ggggacgggttatccctagtggaggaaatactgaaacctggtgttcgtgaaagtttgaaa
gacaaaactaatggccgatctggaccgacgtataatccaacgacaaggatgaccctcagt
gcacaacccagagggaaaaaagaaaagaagaaacatgtggacatatctgatattgttgga
tctgcggcagatatcgagaggaggttacaggaacaattagagaaacctaaacctatgttc
tctgatggacctgctcgtgtagtggaaaaagagaaattacctcacgtttacgcttctacc
actacggcgggagttcaaatctctatggggggacaattttcattacctgcaggtaccaca
agagagctcaatgatacatatgaagaagttgtggtacctccgaacaaacccatacctccc
agaggatccgagagaccagtccggattaacgaacttccccctttggccaaaggttgtttc
ccgagttatgtatcactgaatagaatgcagagcataatacaacctacagctatgaatacc
aatgaaaatttgctcatttgcgctccgaccggtgccggtaaaactgatatcgccatcatg
tctatcatccgtgtactacaatcacacctacttgaaactcctcaagggcgccctcaccca
tccggcttcaatctggatttgtctgtattcaagatcatctacgtcgccccgatgaaggct
ctcgcttctgaaataacacggaaatttggcaaacgactagcatggttaggtgtgaaagtt
cgcgagttgactggagatatgcaaatgacgagacaagagatagcggagactcaggtcata
gtgactactccagagaaatgggatgtggtcacgcggaaaccgacaggagagggtgaactg
gcaagtcgagtgaagcttctcatcattgatgaagtccacctcttgaatgaagaacgaggt
gcggtcatagagagtatcgtagctcggacactccgacaagtcgaatcaagccagtcggtc
atacgtattgtcggtctcagtgcgactttgcccaactatattgatgttggtgactttctc
agggttaatcgttatactggtcttttcttctttgacgcttcttttcgtcctgtgcccctt
gagcagcacttcattggcgtgaccggaaaacctagatctctgcagtcaatcaagaacacc
gatcaggtggtgtttgataaggtctcacaacttgtggaacacggtcatcaagtcatggtc
ttcgttcatgctcgtaaagagacggttaaagcagccgaatctttacgcgagatgtcgaaa
gaagaagccatggtgtcattctttgaatgcatagatcatccgaaatttgaattctaccgt
cgagagatcgcgacatcgcgaaataaggagatgaaagatctcttcaatgccggcttcggt
atacatcatgcaggaatgttgagatcggataggaatatgatggaacgtatgttcgaagat
ggtgctatcaaggtcctttgctgtacatcgacacttgcttggggagtcaacttaccggct
catgccgtcgtcatcaaaggcactcaggtatacgatagtagtaaaggttcgtttgtcgat
ctcagcgtgttagacgttctccagatattcggtcgagcaggtagacctgggtatgagaca
tctggggtggggtatatctgtactactcaggacaagctggatcattatcttcgtaatatc
atgtctcagctgcctatcgagtccaaattcatcggtggtatggtggattcactcaatgcg
gagatatcccttgggacgatcgcaaacgtgcaagaagccattcaatggctaggctacacc
tatcttttcgttcgtatgaaacgcgagcctttcgtgtatggtatgccccatgatgaaggc
aaagatgatccgcaactgggaaacaagcggaacgagttgatcatccaagctgctcgaaga
ttgtccgaggcacggatgatccggtttgatgaaatggctggtgctttggctattacggat
cttggtaggatagctgccaaatactatctgaagcattccacggttgaagtattcaatggt
ttgttcaagcctgagatgaagaatgccgatttgtttgacatgctgtgtcaagctactgaa
ttcgatcaaatacaagtgcgagaaagtgagcaagaggagctacaggcaatcgtggaaagt
gcacatcgagttttggaggttcgtggtggtcctagtgatcgacatggaaaagttaacatc
ctactacaagctcatatttcacgagtctatcttgaagactttgcccttgtctcagatagt
gcatacattgctcaaaacgccgcccgtattatcagagccctgatcgagtgggctttcagt
cgtgattgggcaaacaacgttcaccaccttataaacctcagcaaatctatcgaaaagcgt
tcatggccattcgctctcgttctcaatcaatttcaactgaaagatgagacgttgtatcat
atcatccagtacgccgaagatgttcccgtggaagatctccgttccatgtctgctagagag
attggagatatgatcaagttgaacgaagccaacggtcgagctgtcctcgatgctgcttgg
gctttaccaacggttgagacttcttactctcttcgtcctttggcacatgatttactgaag
atacaagtcatcgtccgacctaacttcagatggaacgctcgattatccgctactgcggaa
ccgttttacgtatggatcgaagattcaactggacttgaaatgcttcaatggcgcagtatc
aaacttcgaccttcgaccacctcattagagttggaatttatcattccattcaccgacgat
ctacccgaaagcataactatcgtgtctacttcagaccgatggtttggttccgatagtcaa
gtggttgtaccgcttatcgatcttgtcatgcccaccccggtcgatgaacccacccctgtt
ttggatgtaccgttcttgcaaatatcatgtttggatgattacaacctcgaacatgcttat
aggtcgtatatgacgaccttgacgagtattcaaacacaggcattttggagtttttatcat
acacagaagaatgtgtttttatcggcaccagtaggcagcgggaagtcatttttgggagaa
gtggcgatatggcatgcttttagacataatcgcgatgctgtggtactcctgattctccct
caaaaggaggcggtaaaggaagtgacagccagacttcgtagactttgtccccgagccaaa
gatatacaggtaaacacgattcttggtcctcatgacgtcgactctttctcaacttccgag
cgcacgattgctattgctacaccttcggcactcctggcggcggaaccgaaagtgttacaa
aagtctctcatgaaattgtccctgacggtttttgacgatctccaccttctcaacccttct
tacgaacttatcatcaccaaaatactctccctcgccaaaccagctcgtactcgactgatc
ggtctctcctcttctctaattgaccctacgtctttagcagattggttgagtgtcgacact
gcatttaggttcaattttctcccccgtgaccgtgggatatctctttcggtccataccaag
actttcaccatccctcattcgaccacgttactcaaaacgatggtcaaaccgacatacgat
atcctcaaatcttcacctggacaagctatcatcttcatcccttcccgtcccatgtgtcgt
gtcatagcgacggatctagtcagacaatccggtacagagatggatctcaacggttttctt
tccgtccctcgtgaagctgtcgaaccttacgctcaacgaatacgagacaccaatctgtac
gaacctcttttacatgggataggatatgtcatacctgatatgtcagggaaagacttggaa
atggtttttgaacttttcgtcagtggattgatcaaagctttgttggttccacgtgaaatg
gcatggaaacttcctgtaagaagtacggttgtgatcctcctcagtgctcaatatgtggaa
tacgaccgaatttcaaacgaacaaagagtggtcaattattctcctgtggaattggtcaaa
atgcaaggtcacgcgattccttctcctttccctattgggggagaaagtaaaatgttcatt
atgtgtcaacaagaacaatctttatttatcaatcgtatcctctcttctggtcttccacta
gaatcatttattccatctttgttaaaaggtgagcgatcggaaagtgaagaaacagaattg
aagaatttactcaaacctcgtccaccacctttgagagttcaagcgaatttatcaaagagg
atagatttaagaaaaagagatatgatggatttattgggttggacatatcttgctgatagg
ataaaagctaatccgagttattatgatgtgggaaatggagaaccagagagggtggtgagt
gattggattgatagatggtttgtcatccggagagcgaaaggggaagagggggatgggatg
actagttctggaagtggagggaaggggaaggggaaagggaatgggaagattaatgggggt
gaagggaaagagaatgggatgacaagtgaacagacttcggaggaaattgatgatgtagag
gatagtgagatggatgtgacggtggaagatagagatcatgatgatagtgggattggtact
tga
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integrated database retrieval system
