Tremella mesenterica: TREMEDRAFT_70811
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Entry
TREMEDRAFT_70811 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tms
Tremella mesenterica
Pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_70811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_70811
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TREMEDRAFT_70811
Spliceosome [BR:
tms03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TREMEDRAFT_70811
Complex C
U4/U6.U5 tri-SnRNP related factors
TREMEDRAFT_70811
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_19
AAA_22
AAA_30
Cas3-like_C_2
PWI
Motif
Other DBs
NCBI-GeneID:
18498393
NCBI-ProteinID:
XP_007002041
JGI:
Treme1_70811
LinkDB
All DBs
Position
Unknown
AA seq
1069 aa
AA seq
DB search
MSDLKTYISDNVVRILGSSDNATVEYVQSLAMSSKTVNDLYGALLNTGLSESAEIQAFAA
QVHSLVPRKAKPKSTKNASVTKPQKFTLMLDEDDDLKSSRKKEKKIKGKEKERDRDGGAV
KLSRSTRKRETDGNWDDAPDEDPDPKRVRLVSPPRDEQENLLPEETEEERLERERLEDLQ
ERDAFAERMKDKDRDRTKKLVTDRSSKSEGGLEATKRAALADDREAREAVIDDLRLRSRQ
EYLTKREQQRLDLLKLEIEDEKILFRDQKMTKREIEAYERKKELIRIMEARQRIDDGTDG
YMLPDDYITEQGKLDRKKRQNALYQRYEESKPVEGQFVTDVDQWEESQRYKTDLRTGAMD
REVVEEAYDYVFDESQGIQFLQEGRLDGTLTAEAQAMLDQIVAAEKKAMSIQETRQSLPI
YEFRDELLEAIAEHQVLVVVAETGSGKTTQLPQYLHEAGYTKGGMRVGCTQPRRVAAMSV
AARVADEMGSRLGQEVGYSIRFEDMTSDKTVLKYMTDGMLLREFLTDPELSTYSALIIDE
AHERTLSTDVLFGLVKDIARFRPELRLLISSATLNAQKFAAFFDDAPIFDVPGRRFPVDM
FYTQQPEANYIHAAVTTILQIHTTQPKGDILLFLTGQDEIEATEENLKETMYALGDKVPE
LIIAPIYANLPSEMQAKIFEPTPEGARKVVLATNIAETSITIDGVVYVIDPGFVKQNNYN
PKTGMSSLVVEPISRASAQQRAGRAGRVGPGKAFRLYTKWAFKNELLQDTIPEIQRTNLA
NVVLMLKSLGINDVLNFDFLDKPPAETIIRSFELLYALGALNHKGELTRLGRRMAEFPVD
PMLSKAIINSENYKCTHEVLTIISMLQESGSLLYRPKDKRVHADKAHKNFIKPGGDHFTL
LNIFEQWADANYSQQWCYENFMQYKSLVRVRDIRDQLAGLCERVEVIIESSPNEIIPVQK
AITAGYFYNTARIDKGGGYRTTKNNHSVYVHPSSCLIGMQPPPRFILYYELVLTSKKYMR
QCMPIEGTWLSELAPHYFNKSEVEQMMGSAGKVKMPKQVAEPKVGPVLA
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctcaaaacctacatcagcgacaatgttgtcagaattctcggatcttcagac
aatgcgacggtggaatacgtacagtcacttgccatgtcctccaaaactgtcaacgactta
tacggtgccctcctcaacactggtctctccgaatccgccgagatccaagcttttgctgct
caggtgcactccctcgttccgagaaaagcaaagcctaagtccacaaagaacgcatcagtg
acgaaacctcagaaattcacacttatgctggacgaagatgacgacctgaaaagttcacgt
aagaaggagaagaagattaaagggaaagagaaagaaagagacagagatggaggggctgta
aagctcagcagatcgacaaggaagagggagaccgacggaaattgggacgatgcaccagac
gaagatccagatcccaaacgggtcagactcgtctcgccaccacgagacgagcaagagaat
ctactgccggaggagacagaagaagagaggcttgagagagaacgattagaggatcttcaa
gagagagatgcatttgcagaacggatgaaggataaagatcgagatcggaccaagaaactt
gttacggatcggtcgagcaagtcagaaggggggttggaagcgaccaaacgagcagctctt
gcggacgacagagaggctagagaagcggtcattgatgatttacgactacgatcacgtcaa
gaatatctcacaaagcgtgagcagcaacgattagacctcctgaagctggaaatcgaggat
gagaagattttgttcagagatcagaaaatgaccaaaagggagatagaagcatacgagagg
aagaaagagttgatacgtatcatggaagctcgacaacggatagacgacgggacagatggt
tatatgctacctgacgattatatcaccgagcaagggaagttggatcggaagaaaagacag
aatgctttgtatcaacggtacgaggagagtaaaccggtggagggacaattcgtcacggac
gtagaccagtgggaggagagtcagcggtacaagaccgatctgagaacaggcgccatggac
agggaagtggtagaggaagcttatgattatgtctttgacgagagtcaaggtatccaattc
ttacaagaaggcagattggacgggactttaacggcggaagctcaagcgatgctggaccag
atcgttgctgctgagaagaaagcaatgagtattcaagagacccgacaatcattgcctatc
tacgaattccgagatgaattgttggaagcgatcgccgaacatcaagtattagtcgtcgta
gctgaaactgggtctggtaaaactactcagctacctcaatatcttcacgaggcagggtac
acaaaaggcgggatgagagtgggttgtacccaacctcgacgagtggcagctatgagtgtc
gccgctcgtgtggcggatgagatgggttcacgtcttggacaagaagttgggtattcgatt
cgattcgaggatatgacgagcgacaagacggtgctcaaatatatgaccgacggcatgttg
cttcgagagtttctcaccgatcctgaactatctacatattccgcccttatcatcgacgaa
gcccatgaacgaactctttccactgatgtcctctttggtttagtcaaggacattgctcgg
tttcgacctgaactccgactactcatctcctctgccacactcaacgctcagaagttcgcg
gcattcttcgatgacgcacccatcttcgatgttcccggacgacgatttcccgttgacatg
ttctacactcaacagcccgaagctaattatattcatgcagcggtgacgaccattctacaa
atacacaccactcaacccaaaggcgacattctactgttcctcactggacaagatgagatc
gaggcaacggaagagaacctcaaagagaccatgtatgcccttggtgacaaggtaccagaa
ctcatcatcgctcctatctatgccaatctgccaagcgaaatgcaagctaagatctttgag
ccgactccggaaggcgcgaggaaggtggttctcgctaccaacatcgctgaaacatctatc
accatcgacggtgtggtttacgtgatcgaccccggttttgtcaaacaaaacaattacaat
cccaagaccggtatgtcatcattggtcgtcgagcccatctctcgagcttctgcccaacaa
cgggcagggagagcaggtcgtgttggtcctggaaaggcattccgattgtacaccaaatgg
gcgttcaaaaatgaattattacaagatacaataccggaaatacaacgtaccaaccttgcc
aatgtcgtccttatgttgaaaagtctaggtatcaacgatgttctcaatttcgactttctt
gataaacctcctgccgagacaatcattcgatctttcgaacttctctacgccctcggtgct
ttgaaccataaaggcgaattgactagactcggtcgacgaatggcggaattcccagtggat
ccaatgttgagcaaggccattatcaactctgaaaattataaatgcacacatgaagtgctc
actatcatttcaatgttacaagaatccggatcactgctttatcgaccgaaagacaagaga
gtgcatgctgataaagcacataagaactttatcaaacccggtggtgatcattttactttg
ttaaacatcttcgaacaatgggcggacgcgaattattctcaacaatggtgttatgaaaac
ttcatgcaatataagagtttggtgagagtacgggacattagagatcagttggcgggattg
tgtgagagggtggaagtgataatcgaaagttcaccgaatgagattataccagtgcaaaag
gcaataactgcggggtacttctacaataccgcacgtatagacaaaggtggtggatatcga
acgaccaaaaacaatcattcagtctatgtccatccttcctcttgtctcatcgggatgcaa
ccgccaccacggttcatactctactacgaactcgttctcacttcgaaaaagtacatgcga
cagtgcatgcctatcgaaggtacatggttgtcggaactggcacctcattatttcaacaag
agcgaggtggaacagatgatggggagtgccggaaaggtcaagatgccaaaacaggtggca
gagccgaaggttgggccagtgctggcgtga
DBGET
integrated database retrieval system
