Tremella mesenterica: TREMEDRAFT_72673
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Entry
TREMEDRAFT_72673 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Pathway
tms03013
Nucleocytoplasmic transport
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TREMEDRAFT_72673
03015 mRNA surveillance pathway
TREMEDRAFT_72673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_72673
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_72673
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
TREMEDRAFT_72673
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
18498793
NCBI-ProteinID:
XP_007002118
JGI:
Treme1_72673
LinkDB
All DBs
Position
Unknown
AA seq
598 aa
AA seq
DB search
MTSEPNSASWLDDDEGGEVDLRKEFAASDSTNNIKAITSVPSLASRLGGFAIDPSDPSGE
VAKQQPIPVPTTTPPSRPRPETSNNLFGKALAGVKSDRAPEPISTVPAPLPQPPVEPKGD
RMRSQHDDDGWGGPPTTQHFTNGQTNGNNGHLQPQDGPQDEQSDAGMSADTGLISNDFQV
EVKLVDQQADPNSPLYSVKSFEALPLHEDLLKGIYACGFKKPSKIQEKALPLLLNNPPRN
LIGQSQSGTGKTAAFTLNMLSRVDPSNATPQALCLCPSRELARQTQEVVEKLGQFTPIKS
ALAVPGSWRRGEKIQAQILIGTPGTLTDMLSRGTRIFDPKEIRVLVLDEADEMLALQGLG
DQTSRIKRMLPAGIQNVLFSATFPDAVQRFAESFAPEANKIFLRKEEVTVEAIKQLYLEC
DGEEQKYNALAALYDCMTIGQSIVFCKRKAVADRITQRLQEEGHQVASLHGDKQNQERDQ
ILDSFRNGETKVLITTNVVARGIDIQQVNMVVNYDVPDLGPEGNFEPDIETYIHRIGRTG
RFGRKGCAVIFVHDERSRREVATIQDALGKSMRRIDATSTTDLEQLEEALKIAMKSVN
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgagcctaactctgcgtcctggctcgatgacgacgaaggtggagaagtagat
ttgagaaaagaatttgctgcttcagattctacaaataatatcaaagctatcactagtgtc
ccttcattggcgtcgagattaggaggatttgccatagacccttcagatccatccggtgaa
gtcgcgaaacaacaaccaatacctgttcctaccacaacacctccctcccgtcctcgacca
gaaaccagcaataatttattcggcaaagctctagctggagtcaagtctgacagggctcct
gaaccaatctctactgtaccagctcctttacctcaacctccggtagaaccaaagggagac
agaatgagaagccagcatgatgatgatggttggggcggaccgcctacaactcagcatttc
acaaatggacagaccaatggcaataatggacatcttcaaccacaagacggtccccaagat
gaacagtccgacgctgggatgtccgcggataccggtttaatcagtaacgatttccaagtg
gaggttaagttggtggatcagcaggctgatccgaactcgcctttgtactctgtcaagtct
tttgaggcgttacctctgcacgaagatttgcttaagggaatttacgcttgcggctttaag
aaaccttccaaaatacaagaaaaggctctgcctctgctgctcaacaatccccctcgtaat
ctgatcggtcaaagtcagtcaggtactgggaaaacggcagcttttactctcaacatgtta
tcccgtgtggatccttcgaatgccacacctcaagccttatgtctttgcccctctcgtgaa
ctcgctcgtcagactcaggaagtggtcgaaaaactaggacagttcacacctatcaaatcc
gctctcgctgtgccgggctcgtggcggcgtggagagaaaatccaggctcagattcttatc
gggacccccgggaccttgactgacatgttgagtaggggcaccaggatattcgatccgaaa
gagatccgagtgctcgttttggacgaagcggacgaaatgctggctttgcagggcttgggt
gatcaaacttctcgtatcaagagaatgctccctgctggtatccagaatgttctcttttcc
gctacctttcccgatgctgtccaacgattcgcggaaagtttcgccccggaagccaacaag
atattcctgcgtaaagaagaagtcaccgtggaggctatcaaacagctgtatttggaatgc
gacggggaagaacagaaatacaacgctctcgctgcattgtatgattgtatgaccattgga
cagagtatcgtattttgcaagcgcaaagcggtcgccgacagaatcacccaacgtctccaa
gaggaaggtcatcaagtggcttctcttcacggggacaaacaaaaccaagaacgtgatcag
atcttggatagtttcagaaatggagaaactaaagtgctcatcactacaaatgtcgtagct
aggggtatagacattcaacaagttaacatggtggtgaactatgatgtgccggatctaggt
ccggagggtaatttcgaacctgatatcgagacgtatatccatcgtatcggtcgaacgggc
agattcggacgtaaaggttgtgcggtcattttcgtccatgatgaaagatctcgtcgagaa
gtagctaccatccaagatgctctcggaaagtctatgagacgtatagacgctacgagtacg
acagatttggaacaattggaagaagctttgaaaatcgccatgaagtctgtcaattga
DBGET
integrated database retrieval system
