Tremella mesenterica: TREMEDRAFT_72807
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Entry
TREMEDRAFT_72807 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_72807
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_72807
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
Pre-60S particles
Helicases
TREMEDRAFT_72807
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18498820
NCBI-ProteinID:
XP_007002145
JGI:
Treme1_72807
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MAPTDSLLESEQLFSQPPFSTLLDARILRALADLSFAHPTLVQAKAIPLLLEGKDVLAKA
RTGSGKTAAYAVPALQKILDVKETLSPASENYQVTRSLILVPTRELSLQVTKFITSLLAY
SEHITIYNASSSSTLRADSPDIIVSTPSRLLTLLESRQVDLTHLVLLVIDEADLVLSYGH
KEELQRLCDPNEGWIPRLGVQGCLMSATLGEEVQSIKGMILHNPAILTLSEPTSSLLTQY
YTHTSERDKFLLLYVLLKLKLIRGKSIVFVNTVDRGYMVKLFLEQFGIKSCVVNAELPLG
SRYHVVEEFNRGVYDVIVATDEVAGDGEPPEEESQSVEAELDEGAEEGGEGNDAAEEVAE
EKKAGSSKRKVPPPLNNRKRQKRQKDPASSLARGIDFTSASSVINFDLPTNPTAYMHRVG
RTARAGHSGLSLSFIVSRSKWSQDKLRQVSLSTAEHDEEVWERILYRVSKEGGGEMKEWD
WGGRKSEIDGFRYRMEDALKSVTTKRVQDARREEVRRELLNSEKLKAHFAANPLDLNYLR
HDAPLHPARIQSHLKHVPSYLMPKVARPFKGDISDGTHVNFARGKYQGKGRGRGGRKKMD
PLKFKS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcacctaccgactctctcctcgagtccgaacaactcttctctcaacctcccttctcc
acactccttgacgcccgtatacttcgagcattagcagatctttccttcgctcatcctact
ttagtccaggccaaagctatacctcttttactagaaggtaaagatgtgctggctaaagct
agaacgggaagtgggaaaacggcagcttatgctgttcctgctttacagaagattttggat
gtgaaagagaccctgtctccagcctctgaaaattaccaagtgacccgttctcttatcctt
gtccccacacgagaattatctctccaagtgacaaaattcatcacctcccttcttgcttat
tccgagcatataacaatctacaacgcttcttcctcttccaccctccgcgccgattcaccg
gacataatcgtatccaccccttcacggttattgacattgttggagagtcgtcaggtcgac
ttgacacatctcgttctgttggtgattgatgaagcggacttggtgttgagttatggacat
aaagaggaattgcagagattgtgtgatcccaatgagggttggatacctagattgggagta
caaggttgtttgatgagtgctacgttgggcgaagaggtgcaaagtatcaaagggatgatt
ttgcataatcctgccattttgactttatccgaacctacctcttccctcttgacccaatac
tacactcatacatccgaacgagacaaatttctccttctttacgtccttctcaaactcaaa
ctcatacgaggtaaaagcatcgtttttgtcaacactgtcgacagaggttatatggtcaaa
ttattcctcgagcaattcggcatcaagagctgcgtggtcaatgctgaattacctcttgga
agtcgatatcatgtagtggaagagttcaatcgaggggtttatgatgtgatagttgctact
gatgaggtcgccggggatggagagccaccagaggaagaatcacaatctgttgaggctgaa
cttgatgaaggtgccgaagaagggggagaggggaatgatgcagcagaagaggtggcggaa
gagaagaaagctggctccagtaagaggaaagtcccaccaccactcaacaatcgaaaacgc
cagaagagacaaaaagacccagcgtcctctcttgccagaggaatcgatttcacctctgca
tcttccgtcatcaacttcgacttacctaccaaccccacggcttacatgcatcgagtaggt
cggacggctcgagccggtcattcggggttatcactctcttttatcgtttcccgttccaaa
tggagtcaagataagctaagacaagtgtccctctccaccgcggagcacgacgaggaggtg
tgggagaggatcctttaccgggtcagtaaagaaggtggaggagagatgaaagaatgggac
tggggtggtaggaaaagtgagattgacgggtttagatataggatggaggatgcgttaaag
agtgtgaccacgaaacgtgtacaagatgctagaagggaagaagtgaggagagaattattg
aacagtgaaaagctcaaagcccactttgctgcgaacccccttgatttgaattaccttcgt
cacgacgctccattacatccagctagaatccagtcgcatctcaaacacgtaccgtcttat
ctcatgcccaaagtggcccgtccgttcaaaggagacatttcagatggtacacatgtcaac
tttgcccgaggcaaatatcaaggaaagggacgaggaagaggtggaaggaagaagatggat
ccgttaaagtttaaaagctag
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