Tremella mesenterica: TREMEDRAFT_73647
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Entry
TREMEDRAFT_73647 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Pathway
tms03013
Nucleocytoplasmic transport
tms03015
mRNA surveillance pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_73647
09122 Translation
03013 Nucleocytoplasmic transport
TREMEDRAFT_73647
03015 mRNA surveillance pathway
TREMEDRAFT_73647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_73647
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_73647
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_73647
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TREMEDRAFT_73647
Spliceosome [BR:
tms03041
]
Complex C
Other components
EJC/TREX
TREMEDRAFT_73647
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TREMEDRAFT_73647
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
18499022
NCBI-ProteinID:
XP_007004343
JGI:
Treme1_73647
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPPVAATNGKAEGDKKGSYVGIHSTGFRDFLLKPELLRAI
SDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVSIIILC
HTRELAYQIRNEFARFSKFMTAVRTAVFYGGTPISADQELLGNKEKCPHIVVGTPGRMMA
LTRDKTLKATHVKHFVLDECDKMLDQLDMRRDVQEIFRATPHHKQVMMFSATLSKEIRAT
CKKFMQSPLEIYVDDETKLTLHGLQQYYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVS
RATQLDALLQECNFPSICIHSALPQPERISRFQQFKAFEKRILVATDIFGRGIDVERVNV
VINYDAPGDADSYLHRVGRAGRFGTKGLAITFVASDADQEVLQKIQERFTVAIPTLPETV
DPATYMTS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcccggatgaagaagaacttgtcgattacgacgaggcggctgaggagaccttc
gcgccacccgtcgcagccacaaatggtaaagctgaaggcgacaaaaagggatcttacgtc
ggcatccactccactggcttcagggatttcctcctcaagccagaattgttgagagccatt
tctgatcttggtttcgaacatccatctgaagtacaacaggaatgtattccccaagctatc
ctcggcacagacgttctttgtcaggccaagtcaggtatgggaaagactgccgtcttcgtc
ctggcttgtcttcaacagattgaacctgtggatggcgaagtgtccatcatcattctctgt
cacacgcgagagcttgcgtaccagatcagaaacgaatttgcccgtttctcaaagttcatg
actgccgtccgtaccgcggtgttttacggtggtacccccatctctgccgatcaagaactt
ctaggcaacaaggaaaagtgcccccacatcgttgtcggtactcccggacgtatgatggcc
ttgactagggacaaaacgctcaaagcaactcacgtcaagcacttcgtcctggacgagtgt
gacaaaatgttggaccagcttgacatgcgtcgtgacgttcaagaaatcttccgtgctacc
ccgcatcacaagcaggtcatgatgttttccgccacgttgtcgaaggaaatccgtgcgact
tgcaagaaattcatgcagagtcccctcgaaatctatgtcgacgacgagacgaagctcacg
cttcacggtctccagcagtattatctcaagttggaggagcgagagaagaaccgcaagctc
aacgacttgctggacaacctcgaattcaaccaggtttgtatctttgtcaagtcggtctcc
cgagccacgcagctggatgcattgctgcaggaatgcaatttccccagtatttgtattcac
tctgcacttccccaacctgagcgtatctctcgattccagcaattcaaggctttcgaaaag
cgaatcctcgttgcaaccgacattttcggccgtggtatcgatgtcgaacgtgtcaacgtt
gtgatcaactacgatgctcctggggacgccgactcgtatctccaccgagtgggtcgtgct
gggcgtttcggtaccaagggtttagccatcacttttgtagcttccgatgcggaccaagag
gttcttcaaaagatccaggaacgattcacagtcgcgatccctactctgccggagacggtc
gaccctgccacatacatgacatcgtga
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integrated database retrieval system
