Tremella mesenterica: TREMEDRAFT_73949
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Entry
TREMEDRAFT_73949 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
tms
Tremella mesenterica
Pathway
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TREMEDRAFT_73949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_73949
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
TREMEDRAFT_73949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
PRP6_TPR
HAT_Syf1_CNRKL1_C
TPR_16
MJ0043_C
Motif
Other DBs
NCBI-GeneID:
18499085
NCBI-ProteinID:
XP_007004873
JGI:
Treme1_73949
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MNDPSLVTQDVDPIEIVHEIQVLTDVETELANAALKAAQAPAFSGEIAEEAETVEQSLEN
AISETKEHVDTVDIALPIGSNGEISTSAISSVRDSASQHASASASATEPLDQVTPDVTMS
HEPSDPARDLKDTLATVTAEITVPVLSDEVILPSDQVSNEEIAVESTEPVIQVEVPSSDT
IESHVPAVQVVSEHVVPSSPAPAIQTVAPVVSIVTETTSAVIAPVLPQPIVSAAPVVPFP
QGLSENSSSVVANPKWIQQWRHAPKDPYIILALFSWAIQRGEINDARAWFSLLYADNPSA
YQPLLVLIQMELDLSNFPQVEELFAKALKGPSGEITSAADVSIWKSYLHYIRRQNPITEG
SPTADQTRETVRKAYEFALKECGHDRESGELWQEYIHFLGEANPKNTWETQQQMDRLRAV
YQRAICIPLNNLESLWKAYDAFESGINKAASKKFLQEHSPAYMTARTALRELKNLVDPIP
HPPIPPHPTFSDEDRSAVSQWKAYLKWEESNPLVIEDPTKLDERISYAIRKCLGAMRHFP
ELWFQAAEYYVAQEKKDQVVEVLKAGVEACPKSFLLTFALADLEEDRGNVTGAGAAYEEL
ISKLGEELEVLVRDVEDEVEGAKGPAVENGEEGKEEREKRGKEVEERRKGEVEEKTVALG
VVWVMYMRHARRASGIKAARGVFGKARKSSHATWHVYEASAMMEYHSNKDSSVAIRIFEL
GLKLFAEDGDYVVKYLQFLLSINDDTNARALFERSALKIPAEKARPLWDAWARYEYMYAD
LAAVQKLEARFAEVFPNDSPLKRFAQRFTYSSLDEIATQDLGFRRILSQSQSQPQPQPHS
TLPPPPQQTQQSQTFETQPTQLPPNPVPAHPSLPPNPTLPPYPTSNLPLQPIHFSPPQKR
PAPESPPRRPRSPQPRRNSRDYSQPNEEPLHKRARPQNRYPSMNERTKERSPMLPVPPAP
YRDRGDRAPSGVAPMYPSQGLREGYDRSGLSRPLAGFFGSLPNARYFDGPIFRPDDIIGL
FNNVDMRGNGIPPSAPLPATYGGRGYDRPDLRYPPAPPPPTYGGRRY
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacccttcgcttgttacccaagatgtcgaccccatcgaaatcgtccacgaaata
caagtcctgaccgatgtcgaaaccgagctcgccaatgcggctctcaaagctgctcaagct
cctgccttctctggtgaaatagctgaggaggctgaaaccgtagagcagagtctagaaaat
gcaatttccgagacaaaggaacacgtcgatactgtggatattgcactccctattgggtct
aatggtgaaatctccaccagcgctatctcttctgtccgagactctgcatctcaacatgca
tctgcatccgcctctgcaaccgagcctcttgaccaagtgacgcctgacgtgactatgtct
catgaaccttccgaccctgcacgcgacctcaaagataccttggcgacagtgacggccgag
attacggttcctgttttgtcagacgaggtaatacttccctcagatcaggtctccaacgag
gagatagcggtggaatcgactgaacctgtaatacaagtcgaagtaccttcttccgacacg
atcgaaagccatgtccctgccgtccaagtcgtgtcagaacatgtcgtcccttcatctccg
gcccccgcaattcagactgttgcacctgttgtgtccatcgtgacggagactacctcagca
gtcatcgcccctgtactcccccagcccatagtatcggcagcgcctgtcgtcccttttcct
caaggattgtcagaaaattcttcatccgtcgtggccaaccccaaatggatccagcaatgg
cgacatgccccaaaagatccatacataatcctggcactgtttagctgggcgatccaacga
ggtgaaatcaacgatgctcgagcatggttttctctactctatgctgataacccttcggcg
taccaaccattgttggtgttgatacagatggaactcgatctttccaacttccctcaagtc
gaagaattgtttgcaaaagcgttgaagggtccttctggggaaatcacctcggccgctgat
gtttcaatatggaaatcatacctgcactacatccgacgacaaaacccaataactgaaggg
tcacccactgcagatcaaacccgcgagaccgtcaggaaagcctacgaattcgctctcaaa
gaatgtggacatgatcgggagagcggagaattgtggcaggagtacattcattttctcgga
gaagcaaatccaaagaatacctgggagacgcaacagcaaatggaccgcctacgcgcggtg
tatcaaagggcgatttgcatccccctgaacaatcttgagagtctgtggaaggcctacgac
gctttcgaatctggaatcaataaggctgcgtccaaaaaattcttacaagaacactcgcca
gcctatatgacggcccgtaccgctcttcgtgaactcaaaaaccttgttgaccccatccct
catcctcctattcctccccatcccacattctcggacgaagatcgctccgccgtatctcaa
tggaaggcgtatctcaaatgggaggagtcgaatcctctcgtgatcgaagatccaacaaaa
ctagacgaacgtatttcgtatgccatccggaaatgcctcggagccatgcgtcatttccca
gaactatggttccaagctgctgaatattacgtcgcacaagaaaagaaagatcaagttgtc
gaagtactcaaagcgggggtggaggcttgtcccaagagctttttgttgactttcgccctg
gcggatctggaggaggacagagggaatgttaccggggcaggtgcggcgtatgaggagttg
ataagtaaattaggcgaggaattggaggtattggtgagggatgtggaggatgaagtagag
ggagctaaaggtccagctgtggagaatggggaggaaggaaaagaagagagggagaagagg
ggtaaagaggtggaagagaggagaaagggagaagtggaggaaaagacggtggctttaggg
gtggtttgggtgatgtatatgcgtcatgcaagaagagcttctggtatcaaagctgccaga
ggagtattcggtaaagctcgtaaatcgtctcatgccacttggcacgtatacgaagcttcc
gcgatgatggaatatcacagtaataaagattcgtccgtcgcgataagaatattcgaattg
ggtctaaagttgttcgctgaggatggtgattatgttgtcaagtatctgcagttccttctc
tccatcaacgacgatacgaacgcccgcgcattgttcgaacgttcagctctcaagatccct
gcggagaaagctagaccgttatgggatgcttgggcgagatacgaatacatgtacgctgat
ctggctgcggtacagaagctcgaagctcgatttgcggaggtattcccgaatgactctcct
ctcaagcgattcgctcaaagattcacatattcctcattggatgaaatcgccacacaggac
ctaggtttccgtcgtattttgtcccaatcccaatcccaacctcaacctcaacctcattct
actctccctcctccacctcaacaaactcagcaatctcaaactttcgaaactcaacctact
caactccctcctaatcccgttcccgcccatccatctctccctcctaacccaaccttaccc
ccttaccccacctctaatctcccccttcagcccatccatttctctcctcctcaaaaacga
ccagcaccagaatcacctccccgtcgacctcgttcacctcaacctaggagaaacagtcgt
gattattctcaacctaacgaagaacctctacataaacgcgcccgtccgcagaataggtat
ccttctatgaacgaacgaactaaagaacgtagtcctatgttacctgtccctcctgctcct
tatcgtgatagaggggatagagcacctagtggagttgctccgatgtatccgtctcaaggt
ttgagagaaggatatgatagaagtggattgagtagacctttggcaggattcttcggatca
ttacctaatgctaggtattttgacggaccaatcttccgtccggacgatatcataggttta
ttcaataatgtcgatatgcgtgggaacggtatacctccgtctgctccacttccggccact
tatggtggaaggggatatgatcgaccagatctgaggtatccacctgcaccccctcctccg
acatacggtggaagaaggtattga
DBGET
integrated database retrieval system
