Tremella mesenterica: TREMEDRAFT_73988
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Entry
TREMEDRAFT_73988 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tms
Tremella mesenterica
Pathway
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TREMEDRAFT_73988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_73988
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_73988
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TREMEDRAFT_73988
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TREMEDRAFT_73988
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH_4
zf-CCCH
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_3
Thiolase_N
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
18499098
NCBI-ProteinID:
XP_007005215
JGI:
Treme1_73988
LinkDB
All DBs
Position
Unknown
AA seq
609 aa
AA seq
DB search
MSVPLPSPSLISAPPRAIPRSRPDKLDLTESSSPTTTTPGGTSFRRPVRNIGFKSPSPNG
NNHSGEVDGQGQGVGGETDNWRDRKTRGPERTVGGFEKRQTVVSPTEKNGGKESPVGDTK
AEALSHVPCRFFKAGTCTAGASCPFSHDGGGTKEVCQWFLKGNCKFGHKCALLHLHPGEP
LSMDRRNKKASQREAREKAEGKPSTPSTQAAPETPAPQHHDTIRTAVPVPIKSALSSSLQ
SPPPHRLPSSPLREPFGPPSGIQAGSPGFGRFASSPNRAGITPPSLGLKSPAVLQLRPSS
AVPSPLRPPVTAAPGFSSSFSQPRLTPDRPIPLSASFADGSSRRNIWSPSQEPSNELLSP
ARVLPPARAVPKHMRAEDEERGEEFLPASLEDLLTPSELARRQNRRDSQGSFPGSPVGIG
HVPYFGERLAQSAGPTMDPGFLRSLWNDTGVDARRGSPLSPADREQERDREDVFNFGPAT
AQPAPRQSLLSQQRGPTSPQRFITTPVLSSPQGLEAPYLRTPPLPSSPSAKALQEHAPGQ
SLPGGLAGALSRLHMTGRPSGLADTGVLIPKTGDSSEEITPPGGTVPLPGNGRREGRDER
DEGVFLMDG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtccctctaccttctccatctctcatatcagcaccacctagggctattcctcga
tctcgacctgataaacttgatttgaccgaatcttcttctcctaccacaaccacaccgggt
gggacatcattccgacgtccagtgaggaatatagggttcaaaagtccttctcctaatgga
aacaatcattcgggtgaagtggatggtcagggtcaaggagtaggaggggaaacagataat
tggagagataggaagactaggggaccagagaggacggtcgggggttttgagaaacgtcag
acggtcgtatctcctacagagaagaatggcgggaaggaatctcctgtaggcgatacaaaa
gccgaggcactctcccatgtaccttgcagattcttcaaagctggtacttgtaccgcagga
gctagctgcccattctctcatgatggagggggaactaaagaggtctgtcagtggttcttg
aaaggtaattgcaaatttggtcataagtgtgcactactccatcttcatcccggtgaacca
ctatctatggatcgacggaataagaaggcttctcagcgcgaagctcgcgaaaaagcagaa
ggaaagccgtctactcctagtacccaagccgctccagagactcccgcccctcagcaccat
gataccatacgtactgctgttccggttccaataaaatccgccctcagttcttctcttcaa
tcccctcctcctcatcgtcttccttcatcgcccttgcgtgaaccttttggtcctccgtct
ggtatccaagctggctcacctggttttggacgattcgcctcttcccccaatcgagcaggt
ataactccaccgtctcttggactgaaatcccctgctgtattacaattgcgtccttcttcc
gctgtcccctcaccattacgtccacctgtcacggcagcacctggattcagtagtagtttc
tcccaacctcgtctcactcccgatcgacctatcccactttcagcaagttttgcggatggt
tcttcccggcgtaacatttggtctccttcacaagaaccatctaacgaacttctctcaccc
gcacgagtattacctcccgccagagctgtacctaaacacatgcgtgctgaagatgaagaa
cgcggagaagaattccttcctgcttccttggaggatctcttaaccccatccgaacttgct
cgaagacaaaaccgacgtgattcccaaggttctttccccggttcacccgtcgggataggt
cacgttccatactttggcgaacgtctagctcaatcagcaggtccaactatggaccctggt
ttcttgaggagtttatggaatgatactggcgttgatgctcgacgaggatctcccttatca
cctgcggatcgagaacaggaaagagatcgagaagatgttttcaatttcggtccggctaca
gctcaaccagcaccaagacaaagcttgttaagtcaacaaagaggtcccacaagtccacaa
agatttatcacaacccctgtattatcctcaccacaaggtttggaagctccttatttacgt
acacctcctttacccagtagtccgagtgcgaaagctttacaggaacacgctccgggtcaa
agtcttcctggcggtttggcgggagctctgtctagattacatatgaccggaagacccagt
ggtctagcagataccggagtcttgattccaaaaactggtgatagtagtgaagagattaca
cctcctggcgggacagtccctctaccagggaacggaaggagggaagggagggatgaaagg
gatgaaggtgttttcttgatggatggttaa
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integrated database retrieval system
