Tremella mesenterica: TREMEDRAFT_74106
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Entry
TREMEDRAFT_74106 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K18715
nucleoporin NUP159
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_74106
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
TREMEDRAFT_74106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_NUP159_NUP214
FliJ
Motif
Other DBs
NCBI-GeneID:
18499127
NCBI-ProteinID:
XP_007005547
JGI:
Treme1_74106
LinkDB
All DBs
Position
Unknown
AA seq
1987 aa
AA seq
DB search
MFSGNSFGALAMESDDSAGPSFTQLEGDEVDVDYLKLVKTNHDVNLRVSDKVDLNGLPQH
TNLIAVSNGLGLLIVGSNSDVKIHRLQDVHKELEGAAKDASPVCEPLVTLSLHARPVWIR
LAMDETRLVVATADGSGLFLWRLMDAVNGNTNPYHIFTSNIPSLLSDVIPNPSPPAANEA
LSHYVLLLTDQGFVIIDIEACQMSAPLPGQFTCASWSVKGKQMVCGTTSGTLVQYTPEGV
EKAAIPSPPDLDPSFRPTFVHWLETDLFLVCYASSGALPDDPLELFIIHRQKSNFTYTKF
FDPLNSMGVPGRSGAHRHFVSLSSWGDKTRHLSFMMSGLASEIAVMRGEYAAEKEPPKWE
VLILEETARGIMPAAKEGLTEDTSCLGLALDLTSQKVVRRGVVAGEDKPDLSPVPRLLAY
SQEGFIVSFDIQFDDVPQYPGMITSQAIASSSSFDTASMTQMTSAPSPMPPTEVKSTFGF
SGFGSGSSAFGSPATPTRSPQPASTTPTAFGQTSTTTPFGTPTKPVAFGASSFGQPATAT
STTATASAFGTPSNPTAFATTTPSAFGTSSKLTAFASPAFGQSTSPAFGQTSFGQSTTPA
TFGKSAFGSSAPSVTPSAFGQSSTPVAFGAPAFGSPKTSASTPSASGQPSQLSVSPSPAF
GTPASTSLGFGAFGSPKPSASSAPAFGFGTSAFGSSTAGTSKPTVTPFGTGGSLGTTSAF
GSNSAFGVKPPDPPSEPPKPSFSGFGAQPTPADDPDSPPVQGTFGLGGFGSALETSSVVP
GLEDSPPTSPLGGRSKPSGLDDSPPPSPPLQPVKSSGSSVTASFIKPSTAFATPSSFGVF
GQLAQAKPAFSTSATPAAFSAPPVTTTVSPSSGAPAFGQSSTIRAPSTASAFGSSGFGQS
SVPKASAFGQAPSSGGSGNVAGGFSAFSAKTMGTSETSSATGGFGGFAAKSGGASAFGNV
TTGGSFASLWWENGGEDGKGHDPCWGTKPSTPVFSFKTPEAETKVENLTTPLFSFKTAKS
SDPPSQPSLFTSPVISTASSPEPGTHIPPSSHPAPEGTVTSPAVSPTPENKTEDSFPIVG
SAAQAGPQSDKLTVPAFSFKPSQEGQTTFPSPFKTLPPTTPLFPSGPSSTSTEPTSSPIP
RVETPEIPNMTSPPIEVIETPDGAATFSDPLIIEATAESSDFEGSDETEDQDREVDEISE
GQSEHVEEFSEGEASEEEDEDHGYATEDYEEETEGDEGVPPPDLSTPIESPLKHPEPVRL
PTSFFGSNQTSQSSQPSLFSRLSPAPSSEEHRSTPEADPPLFSLPTSHTTSSSTPPSTQV
KSETPASSTKPSLFSGFPGFGTAASASTSPAPSTSTPLSSKPSFVFKHATRTSSPLGTHP
PQSASDVNLSPEKPAPFGGLGLGKPPAKPVFTPLAPPSTSSLDKPVTSVFSPKPSSPATT
FTAQTPTKQSSSLAKSGAITPTAPSQSRTDDREVVTFKTPPRPKIPASVDQPPPKTESLA
TLLDFLITDLQAGLNKLRHSLESRDKYHKSLSGPSIGPLTLDTIANYEELPFSSLDQVKD
VVEQLSERLETLRNEEGDVSVELGLLQAGMLRSDMRVGQAEKFLKARQDPAFASAMQVRE
LNPQQSEAQIRVRKSVQNAEHRLDELESLIAGLKRKDRHSISTPALERVQRSVRNVDAAI
RSRQETIEDLSHRISSMRLNTPTRHFGTRSSPSPFNNDIHGSPKSLSLSPSNSHLIFTQP
EVKVTFEPSAEMREAAERALDRDARRNDLRDRLKDLKVKEIKAERPKGKEVVMIDALPVP
RLIQKSKPTQTSSISSSLSKTDIPNTSTPGALHSKIGSGAGTEATNSRDLSGETGMGSRT
NNGDKDGSKEGINLSTPSTGFGNIKLSLSLSPAELITTPTPSNRPSTRSVHHKAHERAPK
LTSAFSEDNTSDVETKDKEGSVGISDSPIRMPGGDFFTFNPPTNGPQMKEVKTPKGFFSL
SGFGNTS
NT seq
5964 nt
NT seq
+upstream
nt +downstream
nt
atgttctccggtaactcgttcggggcattggctatggagtcggatgactcagcagggcct
agctttacgcagctggaaggagacgaagttgacgtcgattacctcaagttggtcaagacc
aaccacgatgtcaatctcagagtgtcggacaaggtggacctgaatgggctgcctcaacac
acaaatttgattgccgtatcgaatggactaggattgctgatagtcggcagcaactccgat
gtgaagatacatcgtctgcaggatgtgcacaaagagctggaaggggcggccaaggatgcg
agccctgtgtgtgagcctttggtcacactgtcattacatgccagacctgtatggatcaga
ttggccatggacgagacaaggctagtggtagccaccgccgatgggtctgggctgtttctc
tggcggctaatggatgctgtgaatggtaacacgaatccatatcacatttttacctcaaac
ataccctcactcctttcagacgttatcccaaatccttcccctcctgcggcaaatgaggcc
ctctcgcattacgttctcctcttgaccgaccaaggctttgtgataatagatatcgaagcc
tgccagatgtccgctcctctacccggacaattcacttgcgcaagctggtccgtcaaaggc
aaacaaatggtctgcgggacaacatcaggcactctagttcagtacactcctgaaggcgtc
gagaaagctgccattccctctccacccgatcttgatccttcattccgtccgactttcgtt
cactggctcgagaccgacctcttcctcgtttgctatgcatcctccggtgctttacccgac
gaccctctcgaattattcatcatacaccgtcagaaatcgaacttcacatacaccaaattt
ttcgatcctctgaactcgatgggtgtgccagggcggtctggcgcacatcgacattttgtc
tcattatctagttggggagataaaacccgacatctgtcatttatgatgtccggtttggct
tctgaaatcgctgtcatgcgtggagaatacgctgcagagaaggaacctccaaaatgggaa
gtgttgattcttgaggaaacagccagaggtatcatgcccgctgcaaaggaaggtttgaca
gaggacacttcatgtcttgggctggcactggatctgaccagtcagaaggtcgtccggagg
ggtgtagtggcgggcgaagataagccagatctatctcctgtaccaagactgttggcgtat
agtcaagaaggcttcattgtgtccttcgacatacaattcgatgacgttcctcaatatcca
ggcatgatcacatctcaagccatcgcatcctcttcatctttcgataccgcatcgatgacg
caaatgacctcagctccatctccaatgccgccgacagaagtcaaatccacattcggattt
agtggatttggcagcggttcgtctgcttttggttctcccgcgacacctacgcggtcccct
caaccagccagtactacacccacagcttttggtcaaacctcaacaacgacgccattcggt
acaccgaccaagcctgtggcctttggggcgtcaagttttgggcagcctgctactgctacg
tcaactactgcaacagcttcagcatttggcacgccttccaatcctactgcattcgctaca
acaacaccctcagcgttcggaacatcttcaaaactaactgcgttcgcatctccggctttt
ggccaatccacttctcccgcctttggacagacttcatttggacaaagcacaacccccgca
acttttggtaaatcagcctttggttcatcagctccgtccgtcacaccatcagccttcggt
cagtcctccactcccgtagcctttggcgcgccagcgtttggatcaccgaagacatcagcc
tcaacaccttcggcgtctggtcaaccttctcaactatctgtctccccttctcccgccttt
ggcacccctgcatcaacttcactaggctttggggctttcggtagtccaaagccaagcgcc
tcaagtgctcccgcattcggttttggtacctcagctttcggttccagtacggcaggaaca
agcaaaccgaccgtcactccttttggcaccggcgggtctttaggtaccaccagtgccttc
ggctccaacagtgcattcggtgtcaaaccacctgatccgccctctgaaccgccgaaacct
tcattcagtggatttggcgctcaacctactcctgcagacgaccccgattccccgcctgta
caaggtacattcggtctgggagggtttggtagtgcactagaaacctcctccgttgttcct
gggctggaagattctccaccaacttcacctttaggcggtcgaagtaaacccagtggacta
gatgactctcccccaccttcacctccactccaacctgtcaaatcatcaggatcgtcggta
actgcatccttcatcaaacccagtacggcattcgcaacacctagcagctttggcgtgttt
ggccagctagcacaagccaaacctgctttttcaacttccgctacacccgcagctttctcc
gcaccacctgtcaccactacagtcagtccgtcgagtggtgcgccagcatttggccaatca
tcaaccatccgagcgcccagcaccgcgtcagcttttgggtccagcggcttcggtcagagt
tcagtacccaaagctagtgcgtttggtcaggcaccttcaagtggtggatctgggaatgtc
gcgggcgggttcagtgcgttctcagccaaaacgatgggaactagcgagacaagttctgcg
acaggtggatttggtgggtttgccgcgaagagtggaggagcaagtgcttttggtaatgtc
acaacaggcggatcatttgcgtctctctggtgggaaaacggaggagaagatggcaaagga
catgatccctgttggggaaccaagccgagtacaccggtgttttctttcaagacacctgaa
gctgaaaccaaagttgaaaacctaacgacaccgttgttctcattcaagactgcgaagtcg
agcgaccctccgagtcaaccgagtctattcacttctccggtcatttctactgcctcctcc
ccagaacctggtactcacatccctccgtcgtcgcatccggcccctgaaggaacagtgacg
tctcccgcagtctcccccacccccgagaacaagactgaagactctttccccatcgtcgga
tctgcagcccaggctggtccacaatcagataagctcactgttcccgcattctcgttcaag
ccatcccaggaaggacagactacgtttccctctccgttcaaaacattaccacctaccacc
cccctgtttccctccggaccatcctccacgtctactgaacccacttcttcgcctatacca
cgagtcgaaacaccagaaatccctaatatgacctcgccacctatcgaagttatcgagacg
cccgatggcgccgccaccttctccgacccgctgatcattgaggcgactgccgagtctagc
gacttcgaagggagtgacgaaactgaggatcaagatcgagaagtggacgagatcagtgaa
gggcaatctgaacatgtcgaagaattcagcgaaggggaagctagtgaggaggaggatgaa
gatcacggctacgctacagaggattacgaagaggagaccgaaggcgacgaaggcgtccct
cctcctgacttatctacgcccatcgaaagtcctctgaaacatcctgaaccggtccgactg
ccaaccagtttcttcggtagcaaccaaacttcccagtcatctcagccttctcttttttct
cgcttgagtcccgctccctcgtccgaagaacatagatctacaccagaggctgaccctcct
ctcttctcccttcctacatctcacaccacttcttcctcgacacccccgtcaacacaggtc
aaatcagaaactccagcttcatcaactaagccctcgcttttctctggattcccagggttt
ggtactgcagcatcagcatcaacatcaccagctccctccacttcgacgccccttagctcc
aagccatcctttgtgttcaaacatgctaccaggacgagttcacccctgggaactcaccct
ccccaatcggctagtgatgtgaacttgtctcctgagaaaccggcgccttttgggggatta
ggcttaggaaagcctcccgccaaacctgtatttactcctcttgccccaccgtccacatcc
tctctcgacaaaccagtcacttctgttttctccccaaagccatcctcccctgccacaaca
ttcactgctcagacacctaccaaacaatcatccagtttagcaaagtccggtgctatcact
ccgaccgctccatctcagtcgaggactgacgaccgggaagtggtgactttcaaaacccct
cccagacccaagattccagccagtgtagatcaaccgcctccaaaaacggaatcattagcg
accttgctcgactttctcataacagatctccaagcagggcttaacaagttgcgacatagt
cttgaaagtagagacaagtaccacaagtctttatcaggaccgtctataggacctttgacc
ctcgacacaatagctaattacgaagaactgccattctcgtctttggatcaggtcaaggat
gtggtagaacagctcagtgagaggttggagacgttgaggaatgaagaaggtgatgttagt
gttgagttgggactgttacaagctggtatgcttagatcggacatgcgtgttggccaagcg
gagaagttccttaaggcaaggcaggaccccgcttttgcatcggccatgcaagtccgggaa
ctcaaccctcagcaatcagaagctcaaatccgagtccgtaaatctgtacagaatgcggaa
catcgtttggatgaattggagagtttgatagctggattgaaaaggaaagaccgacattcg
ataagtacaccagctcttgaaagagtccaacgaagcgtacgtaacgtggacgcagccata
cgttctcgacaagaaaccattgaagatctgtctcaccgtatatcttccatgcgtctcaat
actcccactcgacatttcggtacccgttccagtccttccccctttaacaatgacattcat
ggtagtcccaaatccctttcactctccccatcaaactcacacctcatttttactcagcct
gaagtcaaggtaacgttcgaaccttctgcagaaatgcgtgaagcggccgaacgtgctctt
gatcgagatgccaggcgaaacgatctgcgtgatcgattgaaggatttgaaagtaaaggaa
atcaaagcggaaagacccaagggaaaggaagtggtgatgattgatgcacttccagttcct
cggttgatacaaaagtcaaaacctacccaaacttcttccatctcatcttcactttcgaaa
acagacatacccaacacgtctacacccggtgctctgcattccaaaattggttcgggagcc
ggtacagaagcaaccaactcgcgagatttatcaggtgaaaccggcatgggaagcagaaca
aacaatggggataaagatggaagtaaagaaggtattaatttatcaacaccatcaacagga
tttgggaatataaaactttcactctcactctctcctgcagaactaatcaccactccaacc
ccttcgaatagaccttcaaccagatccgttcatcataaagcacatgaaagagcacctaag
ctgacctctgcgttttcagaggataatacgagtgatgttgaaacaaaggataaggaaggg
tctgtggggattagtgatagtccaattagaatgccaggaggggatttcttcacttttaat
cctccgacaaatggaccacagatgaaagaggttaagactcctaaagggtttttcagttta
tcaggttttggcaatacatcttga
DBGET
integrated database retrieval system
