KEGG   Thermoanaerobacter mathranii: Tmath_0556
Entry
Tmath_0556        CDS       T01250                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
tmt  Thermoanaerobacter mathranii
Pathway
tmt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tmt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Tmath_0556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tmt03400]
    Tmath_0556
Enzymes [BR:tmt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Tmath_0556
DNA repair and recombination proteins [BR:tmt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Tmath_0556
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 Viral_helicase1 HHH_5 AAA_11 PIF1 SLFN-g3_helicase DEAD Helicase_RecD nSTAND3 PhoH AAA_22 MeaB AAA_24 Ribosomal_S13 SRP54 DNA_pol_lambd_f AAA_28 KAP_NTPase ABC_tran NPHP3_N UvrD-helicase HHH NTPase_1 RsgA_GTPase ATPase_2 AAA AAA_16 AAA_23 cobW T2SSE UvrD_C AAA_12 Rep3_N AAA_29 TrwB_AAD_bind MobB CbiA HHH_2 KTI12 TsaE Zeta_toxin
Other DBs
NCBI-ProteinID: ADH60311
LinkDB
Position
588797..591004
AA seq 735 aa
MVDIEGVVEEIIFRNEQNGYTVLELSTQGLAVTAVGYMPFVNIGERIKIEGEWVEHPDYG
EQIKVLNYQTLAPTTLEGIEKFLASGLIPGIGPVTARKIVKKFGVDSLNIIETAPERLKE
IKGLSDEKIKRICEAYEMQKGVKEVMVFLQGYGISTAMAIKIYKEYGNNAIEIIKQNPYR
LADDIFGIGFKTADKIAENLGVDPHSLYRISSGTRYVLMQYAANGHTYVPKELLKKEAAS
LLEVSEEEVEDSFVLLVQNEKIHIETFEDNTVGIYYIPYYIAELHTAERLFNMTLMENKD
LGLDVQKEIRNFEKETGILLAENQKLAVEEAVKNSVVVITGGPGTGKTTIINCIIRIFEK
AGKKVALAAPTGRAAKRITEATGKEAKTIHRLLEYTYSEEEGKGFNKNEKDPLKYDVIII
DEASMVDILLMNALLKALPIGAKLILVGDADQLPSVGAGNVLRDIIDSGIVKVIRLKEIF
RQQKQSLIVVNAHKINNGEYPTYNDKNSDFFFINANTQEDILKTILELVINRLPKAYGFH
PINDIQVLTPMRKGIIGVHNLNLELQKALNPHDKTKPEKTMKEFVFRVGDKVMQIKNNYK
IKWKKGDEEGEGVFNGDIGIIQSIDEELQELTVYFDDEKFVTYDFSDLDELNLSYAITVH
KSQGSEFPVVIIPITYGPPMLLTRNLLYTAVTRARKLVILVGQEKYLKFMIDNNRISKRY
SGLLSRLKKTLLYVN
NT seq 2208 nt   +upstreamnt  +downstreamnt
atggttgacatagagggcgtagttgaagaaataatttttagaaatgaacaaaatggttat
acagttttagaattaagtacccaaggcttagcagttactgctgtaggttatatgcctttt
gtaaacattggggaaagaattaaaattgagggagaatgggtagaacatcctgattacgga
gagcaaattaaggttttaaattatcaaaccttggctcccaccactttagaaggaatagaa
aagtttttagcttctggcttaattcctggaataggtcctgttacagcaagaaaaattgta
aaaaagtttggcgttgattctttaaatataattgaaactgcaccagaaagattaaaagaa
ataaaaggtctaagcgatgagaagataaaaagaatttgtgaagcttatgaaatgcaaaag
ggcgtaaaagaagtgatggtgtttttgcaggggtacggcatttctactgcaatggctata
aagatttataaagaatacggaaacaacgcgattgaaattattaaacaaaacccttacaga
ttagctgatgatatatttggaataggatttaaaacagcagacaaaatagcggaaaaccta
ggagttgaccctcattctctatatcgcatatcttctggtactcgatatgttttgatgcag
tatgcggcaaatggtcacacctatgtgccgaaagaattgttaaaaaaagaagcagcaagt
ttgttagaagtaagcgaagaagaagtagaagattcttttgtgcttttagtacaaaatgaa
aaaatacatattgaaacttttgaagataatactgtaggaatctactatataccttattat
atagctgaattacacacagcagagagattgtttaacatgacactaatggaaaataaagat
ttaggtttagatgtccaaaaagaaattagaaattttgaaaaagaaacaggtattttgtta
gcagaaaatcaaaaattggctgtagaagaagctgttaaaaattctgttgttgtcataacg
ggaggtccaggcacaggaaagactacaataataaattgtataatacgtatttttgaaaaa
gctggtaaaaaagtggctcttgcagcccctacaggaagagccgcaaaaaggataactgaa
gctactgggaaagaggcaaaaaccattcataggcttttagaatatacttattcggaagaa
gaagggaagggctttaacaaaaatgaaaaagacccattaaaatacgatgttataataatt
gacgaagcttcaatggtagatatattgcttatgaatgctttattaaaagccctacctata
ggggcaaaactgattttagtaggggatgctgatcagcttccatctgttggagccggaaat
gtcttaagagatataatagacagtggaatagtaaaagtgatacgtttaaaagaaattttt
agacagcaaaagcaaagtttgatagtagtaaatgctcacaagataaataatggagaatat
ccaacctataacgataaaaatagcgatttcttttttataaatgccaacacacaagaggat
atattaaagactatattggagcttgtcataaaccgacttcctaaagcttatgggtttcat
cctattaatgatattcaagtactcactcctatgagaaaagggataattggtgttcataat
ttaaatttagaactgcaaaaagcattaaatccccacgacaaaactaaaccagaaaaaaca
atgaaggaatttgtcttcagggtgggggataaagtgatgcagataaaaaataactacaag
ataaaatggaaaaaaggcgatgaagaaggggaaggagtgtttaacggagatataggaata
attcaatcaatagacgaagaattacaggaattgactgtgtattttgatgacgaaaaattt
gttacttatgacttttctgatttggacgaactaaatttgtcttatgccataacagtccac
aaaagccaaggcagtgaatttcctgttgtcataataccaattacttatggcccccctatg
ctacttacaagaaatcttttgtatactgctgttacaagggcaaggaaattggttattttg
gtagggcaagagaaatatttgaaatttatgattgataacaatagaatttcaaaaagatat
tcagggcttctttcaagacttaaaaaaacgcttttgtatgtaaactag

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