Thermoanaerobacter mathranii: Tmath_0763
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Entry
Tmath_0763 CDS
T01250
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tmt
Thermoanaerobacter mathranii
Brite
KEGG Orthology (KO) [BR:
tmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmt03016
]
Tmath_0763
Enzymes [BR:
tmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Tmath_0763
Transfer RNA biogenesis [BR:
tmt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tmath_0763
Prokaryotic type
tRNA splicing ligases
Tmath_0763
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADH60501
UniProt:
A0ABM5LP02
LinkDB
All DBs
Position
803011..804519
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AA seq
502 aa
AA seq
DB search
MLDDMFLFVNFRKIRDRKGVNFHGVEVIQGYTVVKDGINKWCIPKFGKMRVDAVIYVNDT
LKELLHEDQSLRQITNAATLPGVVKPVIGMPDIHEGFGLPIGGVMAIEEKGVISAGAVGY
DINCGVRLLRTNLEAEYFNKELLYKLIERIEYYVPTGIGKKGRHKGITRLIFDDVVHNGV
EAVIKAGFGKKSDLNFIEEGGKLSGADISAVSKEAQGRGEEQLGTLGGGNHFIEIQQVDS
ILDEKLAERFGLFKGQIAVMIHTGSRGFGHQIATDYTKILWEAAKKYGVDVPEKGLAAAP
IDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIKAFEDVLKKSSESMGFQLVYDVAHNIAK
WEEHGGKKLLVHRKGATRALPAGHPQNPSFYKESGHPALIPGSMGTGSYVVVGTEKAAET
FYSVNHGAGRRLSRNKAKKITKEEFEKAMGDVIYNVRSFKDIVDESPLAYKDVEEVISVL
SERGITTPVARLIPLAVVKGAD
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgatatgtttttattcgtgaattttaggaaaataagagataggaagggggta
aacttccatggggtagaggttatacagggttatacggtagtaaaagacgggattaataaa
tggtgcattcccaagtttggcaaaatgcgtgttgatgcagtaatttatgtgaatgatacc
ttaaaagagcttttgcatgaagaccagtctttacgacagattaccaacgctgccaccctt
cctggagtggtgaaaccagttatagggatgccggatattcacgaagggtttggtcttcct
ataggaggagttatggcgatagaggagaaaggggttatttcagcgggagccgtaggatat
gatattaattgtggtgtaaggcttttgagaactaatcttgaagcagagtattttaataaa
gagcttttgtataagcttatagaacggattgagtattatgttcctacaggcatagggaaa
aagggacggcataaaggtattacgaggttaatttttgatgatgtagttcataatggggta
gaggctgtcattaaggcaggttttgggaaaaaatcggatttaaactttattgaagagggt
ggaaagctttcaggggcagacatttctgctgtgtcaaaagaagcgcaaggaagaggagaa
gagcagcttggcactttaggtgggggcaatcattttatagagattcaacaggttgactct
attttggatgagaaattggcagagcgttttggacttttcaaagggcaaattgctgtaatg
attcacacaggaagccgcgggtttggacatcagattgcaacagattatactaagattcta
tgggaggcggcaaagaaatacggtgttgatgttccagaaaaagggcttgcggcagctcct
attgattcaaaggagggtaaggcgtattataaagccatggcagcagcagtgaattttgct
ttttcaaacagacaaataattatgtttgatgttataaaagcatttgaagatgtattaaaa
aaatcttcagaatctatgggctttcaactggtatatgatgttgctcataatattgctaaa
tgggaagaacatggagggaaaaagcttcttgttcacagaaagggagcgacgagagcttta
ccagcggggcatccgcaaaatccttctttttacaaagaatcaggacatcctgctcttatt
cccggcagtatgggtacaggttcttacgttgtggttggcacagagaaagcggcagaaact
ttttattcggtaaatcacggggcaggacgaaggctttctcgcaacaaagcgaaaaaaatc
actaaagaggaatttgaaaaggctatgggagatgttatatacaatgtcaggtcttttaag
gatatagttgatgagtcgccgctggcctataaagatgtggaagaagttatttctgtcctt
tcagaaagaggaattacaacacctgttgcacgccttatacctcttgcggttgtaaaaggt
gcagattaa
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