Trichechus manatus latirostris (Florida manatee): 101340282
Help
Entry
101340282 CDS
T05135
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101340282
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101340282
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
101340282
NCBI-ProteinID:
XP_012410175
UniProt:
A0A2Y9FVS8
LinkDB
All DBs
Position
Unknown
AA seq
1662 aa
AA seq
DB search
MSDDIRKRFEFPNSLIQSQAVGHLIAAVLKENGYSEKIHQSTNQTPALNLLWEKCCSDNV
VVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIVKLLQMQALKEGQGG
EKNIQDIYTIRFCVRLRVSMFIQLLSDMNIGHLWTTFETYCFSPWELDITTANHYVNYRS
EIPCVQIMAPFLWYLYCEPSQLQEYAKLRLALLKVLLQPSVLCEKEQPSVLEQHILQLCC
DMVPCLQDFPVELVLSGIALLLLQTPASQQRPILSLALKLLSFAEGQKIPKSSLLLVMPV
LQILSSTALEDCISVDEEGPSRQQLAVNLLEMVQQECYRDDSQKVPSLIPLLMFKLGRPL
EPVSYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPQLRAVTLRLLTSLWEKQDRVYPEL
QRFMAMSDVPSLSVGREVQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKSD
QATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNT
AEYENFKVQVLSFLWTQTQNKDPVVANAAYKSLSQFSAGEHTILHLPEKIRPEIPVSDEL
DEEEDDEGDEKEVDLSIPGFCYLKLLSLTAPSVLPALEEFFTSLVKQEMVNMPRGVYHSA
LKGGVRSDQGKTIAGIPNFMLKMYETNKQPGLKPGLAGGMLFCYDISMYQSKDGKPLNRL
MASRGRSFKQTSLALVHEVHIQLLEWHRAVFLPQAWLAYMNRAYHAILQGRIAELELQLK
HGKEGPEEVQYKKSTAWLWVRDMLTDEITKAAAKDSPVVKGNALLALSSLAVVVSKHEAS
LSSDSDEALEIQPNFLSMKEWVSMVLDTLLVIVDSHYQPRGQLFSWFYYKSYSGENTASA
IARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFL
SRLCEEKLSDISGQQMNLLLMKSLNALENCCFDTSLEYNTGCILGVGLVLCLMSHSSHTE
SRVHVAASLRKLSTYLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAAEAEDIMNKLR
LLVENNQQTSGFALALGNIVHGLSVCGHGKAEDLGNKLLPAWIRIVLSEGTPTMLCLAAL
HGMVALVGSEGDVIQLKSEAIQTSEFQGRLNEVIRTLTQVISVSGMIGLQSNAIWLLGHL
HLSTLSSNQSRSSVPTDYSYLPESSFMRAAIGFFVTGGKKGPESVPPSLLKVVMKPIATV
GENYQFPPVNWASLLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAAALLGLWTMPPLIHG
LSLNIKKYLLVSAPLWIKHVSEEQLLAFVENLMVAVFQAAPRISSTELCQNSLQGLSQAM
KLPSPAHHLWSLLCDAVGKIFDLLPNKIRRNDIELYISVAKCLLEMTDDNINRVAQITKS
NIEKAAFVKLYLISQGRFPLMHLSDVLSVAVQHQERETLAWMILHSLYQARIVSHANTGV
LKRMEWLLEMMGYIRSVAYQSTSVQNVALDKALDFLLLIFAAAVVAWADHAAPLLLGLSA
SWLPWHLGSAGSAPSFLGRSPMHRVILEEVLTLLPSSMPLLLQKEPWKEQTQKFIDWLFN
IMEAPKEALSAKSRNLLKATLLSLRVLPEFKKKAVWTRAYGW
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaggaaaaggtttgaatttccaaattctcttatccagtcacaggct
gtgggtcatcttattgctgcagtcctaaaggaaaatggttattcagaaaaaatccaccag
tctacaaaccagactcctgctttgaacttgctgtgggaaaagtgttgcagtgacaacgtg
gtggttcgaacagcctgctgtgagggtttggtggcacttgttgctcaggatcatgcggaa
ttcagctatgttctcaatgggatactcaacctgattccctcgaccaggaatacccatggc
ttgataaaagccattgtgaaattattacaaatgcaagctcttaaggaaggacaaggtggg
gagaagaatattcaggatatatatactattaggttttgtgtgagactcagagtcagcatg
tttatccagctgctcagcgatatgaacataggtcatttgtggaccacatttgagacatac
tgctttagcccctgggagcttgacattaccacagctaatcactatgtgaattacaggtca
gagattccatgtgtccaaataatggcaccatttctatggtatttatattgtgaaccatcc
cagttacaagaatatgctaaacttcgactagccctgctaaaagtcttacttcaaccctcc
gttctttgtgagaaagaacaaccatcagtattggaacaacacatacttcaactgtgttgt
gacatggttccgtgtttgcaggactttcctgttgaactggtcttaagtggaatagcttta
cttcttctgcagactccagcaagtcaacagaggccgatcttaagtctagctttgaagctc
ctctcttttgctgagggtcagaaaatcccaaagtcatccctgctgctggtaatgccagtt
ctgcagattttatcgtctactgccttggaagactgtatatctgtggatgaagaagggccc
tctaggcagcagttggctgtaaaccttttggaaatggtacagcaggagtgctacagagac
gacagccaaaaggttccaagtctgattccacttttgatgttcaaattaggaagaccactg
gaacctgtatcgtacaatgatatcttgtatactttacctactctcggtgttcacaaggtg
tgcataggacaaattctacgagtaatccaactgcttggaaccaccccacagctaagagct
gtcactttgcgcttgttgacatctttgtgggaaaaacaggatcgtgtctatcctgagctg
cagcggttcatggccatgtctgatgtgccttctctgtctgtgggcagggaggtccagtgg
gagaaactaatcgcgaaagcagcatcgatcagagatatatgtaagcaaagaccatatcag
catggtgctgatatgttggcagctatttctcaggtgttaaacgaatgcactaaatctgat
caagctactccagcagccttggtgttacaaggtcttcatgcgctctgtcaagctgaggtt
gtttgtattcgctctacttggaatgctctctccccaaaactgagttgtgacacgagacct
ctcattttaaagaccctcagtgaactcttttctctggttccttccttaacagtcaataca
gctgaatatgagaattttaaagttcaagtcctcagcttcctctggactcaaactcaaaac
aaggacccagttgtagcaaatgctgcatataaatctctgtcacagtttagcgcaggggag
cacaccattcttcatctgcctgaaaagataagaccagaaattcctgtttctgatgagcta
gatgaagaagaagatgatgagggtgatgaaaaggaagtggacctttcaattcctggtttt
tgctatctcaaactgttgtcacttactgctccttcagttttaccagctttggaggaattt
tttacatcacttgtgaaacaagaaatggtgaatatgccccgtggggtgtatcactctgca
ttaaaaggaggtgtccgttcagatcaaggaaagactattgcaggaatccccaattttatg
ttgaaaatgtatgaaacaaacaagcaaccaggattgaaacctggccttgccggtggcatg
ttattttgttacgatatttcaatgtatcagagtaaagatggcaaaccattgaatcgattg
atggccagtagagggcgaagtttcaagcagacatcacttgctcttgtgcatgaggttcac
attcagctcttggagtggcaccgtgcagtatttctcccacaggcctggcttgcatatatg
aatcgagcatatcatgccattttacagggaagaatagcagagttggagttacagttaaaa
cacggaaaagaaggacctgaggaggtgcagtacaagaaaagcacagcctggctctgggtc
agagacatgttgactgatgagatcaccaaggcagctgcaaaggacagcccagtggtcaaa
gggaacgcactgttagccttaagtagccttgctgttgtcgtatccaaacatgaagccagc
ctctcctcagactcggatgaggccctggagattcaacctaacttcctttcaatgaaagag
tgggtttccatggtgcttgataccctcctggtaattgtggatagtcattaccaaccccga
ggacaactcttctcctggttttattataaatcctattccggtgaaaacacagctagtgcc
attgcccgttctgctgccgccacggctttgtctctcctcgtgccagttttcattatctct
tgcaaagagaaggttgaggaaatcctgaacatgctgactgccaggttacctgggaaacca
agtgctgacgagtctcaggccgtgcaaatccacatgggccttgctttggggatgtttctc
tctcgtttgtgtgaggagaaactcagtgatatatctggccaacagatgaaccttcttctc
atgaagtctttgaatgctctggaaaattgctgcttcgacaccagtcttgaatacaacacg
ggctgtatactgggagttggacttgttctgtgtctgatgagccacagcagccacacggaa
tcccgggtccacgtggcagcatcgcttcgaaagctctctacatacctagatgacagtggg
agccagagcagaacgtttcaggaggtccttgcctatacccttagctgtgtatgtacgtca
gcgttcagtgctggaattatcgaggcagcagaggctgaagatattatgaataaacttcgg
ctgttagtagagaacaaccagcagacttcaggttttgccctggcattaggaaatatagtt
catggtttgtctgtgtgtggacacggaaaagctgaagacttgggcaacaaactgcttcct
gcctggatcagaattgttctatcagagggcactcccacgatgctttgtctggcagctctt
catggcatggtggccttggtaggctctgaaggggatgtaatacagctgaagtcagaagcc
atccagacctctgagtttcaaggcagacttaatgaagtcattagaaccttaactcaggtc
atcagtgtctctgggatgatcggccttcagtcaaatgcaatctggcttctaggacatctt
catctatctactctctcctcaaatcaaagtagaagctctgttcctactgactatagctat
ttgcctgaaagcagttttatgagagcagccattggcttcttcgttacgggaggaaaaaaa
ggtcctgagtctgtacctccttcccttcttaaagtagtgatgaagcccatagcaactgtt
ggagaaaactaccaattccctcctgtgaactgggcttcactcctctcaccactgatgaga
ctaaactttggtgaagagatacagcaactgtgccttgaaattatggtgacccaggcacag
tcatcacagaatgcagctgctctgctgggcttgtggacaatgccaccactaatccatggt
ctgagtctgaatatcaagaaatacctcctggtatctgcacctctgtggataaaacatgtc
tctgaggaacagctcctggcttttgttgaaaacttaatggtggcagtttttcaagctgct
ccccgcatttcaagtactgagttatgtcagaattccttacagggtctaagccaggccatg
aaactgcccagccctgcccaccacctctggagtctgctctgtgatgctgttgggaaaatt
tttgaccttctgccaaataagattcggagaaatgatatagagctgtatatcagtgtagca
aaatgcctcttggaaatgacagatgacaacatcaatcgagttgcccagattactaagagc
aacatagaaaaggctgcctttgtcaaactgtacttaatctctcaaggacgattccccttg
atgcacttgtctgatgtgctcagtgtcgctgtgcagcaccaggagagggagacactggcc
tggatgatactgcacagcttataccaggcgcggatcgtgagccatgccaacacaggcgtg
ttgaagcgaatggagtggctcttggaaatgatgggttatattagaagtgttgcttaccag
tcaacatctgttcagaatgtggctcttgataaggccctggacttcttgttgttgatattt
gcagcagcagtcgttgcgtgggcagaccatgcagcccctcttctccttggcctcagtgcc
agctggttgccatggcatcttggctcagctgggtcagcacccagcttccttggcaggagt
cccatgcacagggtcattctggaggaggttctcactctccttcctagtagcatgcctctt
ctgctgcagaaggagccatggaaggagcagactcagaagttcattgactggctattcaac
atcatggaagcccccaaagaagccctttcagcaaaatccaggaatctgttaaaagccacc
ctcctgtccttgagagttctcccagagtttaagaagaaagctgtatggaccagagcatat
ggttggtga
DBGET
integrated database retrieval system
