Trichechus manatus latirostris (Florida manatee): 101340573
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Entry
101340573 CDS
T05135
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu00100
Steroid biosynthesis
tmu01100
Metabolic pathways
Module
tmu_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
101340573
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tmu01006
]
101340573
Enzymes [BR:
tmu01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
101340573
Prenyltransferases [BR:
tmu01006
]
Terpene biosynthesis
Squalene/phytoene synthase
101340573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
SCC3_C
Motif
Other DBs
NCBI-GeneID:
101340573
NCBI-ProteinID:
XP_004382265
UniProt:
A0A2Y9DXJ4
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MEEKPYAEPAILMAAAACSTKAMSLFKRTFALSPAAVPRGAGLGTPPRGCPYPPSAWPSK
DWLRGEGSCGLLRSPTTAGRLPLPHSCSSTSPSSVCLLCPQDSLSNSLKTCYTYLNQTSR
SFAAVIQGLDGEMRHAVCIFYLVLRALDTLEDDMTISVEKKVPMLHNFHSYLYEPDWRFM
ESKQKDRQVLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLNKHVTSEREWDKYC
HYVAGLVGIGLSRLFSASELEDSVVGEDIDLANSMGLFLQKTNIIRDYLEDQQEGREFWP
QEVWSRYVKKLSDFAKPENIDLAVHCLNELITNALHHIPDVITYLSRLRNQSVFNFCAVP
QVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPKS
DPSSNKTRQIISTIRTQNLPTCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYV
QTGEH
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaaccctacgctgaacccgcgattctcatggccgcagctgcctgcagcacc
aaggccatgtccctcttcaagcggacctttgcactgagtcccgccgcggtgcctcgaggc
gcgggcctagggacaccgccgcggggctgcccctaccctccctccgcctggccctccaag
gactggctgcggggagagggctcctgtggcctgctccggagcccgaccacagccggacgc
ctgcccctgccccattcctgctcctcgacttctccctcctctgtgtgtcttctctgccca
caggactcgctcagcaacagcttgaaaacttgctacacgtatcttaatcagaccagtcgc
agtttcgcagctgtcatccaggggctggatggggaaatgcgccatgcagtatgcatattt
tatttggttctcagagctttggacactcttgaagatgacatgaccatcagtgtggaaaaa
aaggtcccaatgttacacaactttcactcttacctttatgaaccagattggcggttcatg
gagagcaagcagaaggatcgacaagtgctagaggattttccaacgatctcccttgagttt
agaaatctggctgaaaaatatcaaacagtgattgttgatatttgtcggaagatgggcttt
gggatggcagagtttttgaataagcacgtgacctctgaacgggagtgggacaagtactgt
cactatgttgctgggctggtgggaattggcctttcccgtttgttctcggcttcagagtta
gaagactctgtggttggtgaagatatagatcttgccaactctatgggcctgtttctgcag
aaaacaaacatcattcgtgattatctggaagatcagcaggaaggaagagagttttggcct
caagaggtttggagcaggtatgttaagaagctgagtgatttcgctaaaccagagaatatt
gacttggctgttcattgcctgaatgaacttataaccaatgcattacaccacatcccagat
gtcatcacctatctttcaagacttagaaaccaaagtgtgtttaacttctgtgctgttcca
caggtaatggcgattgctactttggctgcctgttataataatcaacaggtattcaaaggc
gttgtgaagattcgaaaagggcaagcagtaacgctaatgatggatgccaccaatatgcca
gctgtcaaagctataatataccagtatatggaagaaatttatcatagaattcccaaatca
gatccatcttctaataaaacaaggcagatcatctccaccatcaggacacagaatcttccc
acttgtcagctgatctcccgaagccactactctccaatttacctgtcatttgtcatgctg
ttggctgccctgagctggcagtatctgagcaccctatcccaggttacagaagactatgtt
cagactggagaacattga
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