Trichechus manatus latirostris (Florida manatee): 101341139
Help
Entry
101341139 CDS
T05135
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03013
Nucleocytoplasmic transport
tmu03015
mRNA surveillance pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101341139
09122 Translation
03013 Nucleocytoplasmic transport
101341139
03015 mRNA surveillance pathway
101341139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101341139
03041 Spliceosome [BR:
tmu03041
]
101341139
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101341139
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101341139
Spliceosome [BR:
tmu03041
]
Complex C
Other components
EJC/TREX
101341139
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101341139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101341139
NCBI-ProteinID:
XP_004390786
UniProt:
A0A2Y9QHN8
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagatgatgaagtggagaca
gcagctggaggagatggggctgaggcccctgccaaaaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgcgccatt
gttgactgtggttttgagcatccgtcagaagtccagcatgagtgcatacctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccagttactgggcaggtgtctgtgttggtgatgtgt
cacactcgggagttggcttttcagattagcaaagagtatgaacgcttctctaaatacatg
cccaatgtcaaggttgcagttttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaattgcccgcatatcgtcgtggggacccctggccgcatcctggccctggct
cgaaataagagcctcaacctcaaacatattaaacactttatcttggatgagtgtgataag
atgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctagatgtccttgagtttaaccaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaatttcccagccattgccatccaccgtggg
atgccccaggaggagaggctttctcggtaccagcagtttaaagattttcaaagacgaatt
cttgtggctaccaacctatttggccgaggcatggacatcgagcgggtgaacattgccttt
aactatgacatgcctgaggattctgacacttacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccattacgtttgtgtcggatgagaatgatgccaagattctt
aatgatgttcaagatcgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
DBGET
integrated database retrieval system
