Trichechus manatus latirostris (Florida manatee): 101342040
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Entry
101342040 CDS
T05135
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
101342040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tmu03036
]
101342040
03400 DNA repair and recombination proteins [BR:
tmu03400
]
101342040
Chromosome and associated proteins [BR:
tmu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101342040
DNA repair and recombination proteins [BR:
tmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
101342040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
101342040
NCBI-ProteinID:
XP_004388006
UniProt:
A0A2Y9RTI0
LinkDB
All DBs
Position
Unknown
AA seq
1495 aa
AA seq
DB search
MPNERIPHPGQTQEQDCLQSQYVGDDEEMAVKQENGVPAAGVEESLPSCSSDNGLSASAE
GCALGVPRRGPALLQIDRHQIQAVEQSAQALELQGLGVDVYDQDVLEQGVLQQVDDAIHE
ARRVAQLADTEKEYQSVLDDLTSCTTSLRQINKIIEQLSPQAPTNRDINRKLDSVKRQKY
NKEQQLKKITAKQKRLQAILGGAEVKVEIDSASLEEDAEPGPSSLGSMLMPAQETAWEEL
IRTGQMTPFGTQIPQKQERKPRRLMLNEASGFEKYLADQAKLSFERKKQARKKRLTRKAP
ASATSESNPTLNENQQNKRSKVPSKMDKRLEKHIKKLQRRALQFQGKVGLQKRAKALEAG
IKREDGASESEESEYLPEEEEDKMAEADLSEGCAAYELKPPLKGRKRQKKVTVQEMDEDF
FPSSGEESEAGGSGSRKAVRWRDDGDEDCYKQRLRRWNKLRLRDQEKCLKLEDNSEDSDA
EFDEGFKVPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSY
SKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVREFHTWWPPFRVAILHDTGSYTHKKEKLI
GDIAHYHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRI
ILSGSPMQNNLRELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASTVQVKTAYKCA
CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHEVYQNFIDSKEVHKILNG
ELQIFSGLVALRKICNHPDLFSGGPRNLRGLPDEELEEDQFGYWRRSGKMIVVESLLKIW
HKQGQRVLLFSQSRQMLDILEVFLRARKYSYVKMDGTTTIASRQPLITRYNEDTSIFVFL
LTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK
IYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDVQT
PKRHLKRKIQPAFGTEHGVLNCKKLPDSDISANDATSPEEKSKFIGAEVPAVTANYSDPL
RDDPQTSNNLTSSDVLLEEKYWQINAVSRLEESSKISGNRECSDSPRDSETCRTPGEEGT
DEKQDLSCKGEGCQVQCEGQSCQVQKEPFSENAQMGNNFYKHKSKTKHHVVVEDGTLEKR
LRRKEKPKCSKLCKDAKFEGTRIPHLVKKRQFQRQDSADESEAKERNSDDYVLEKLFKKA
VGVHSVMKHDAIMDGASADYMLVEAEATRVAQDALKTLRLSRQQCLGAASGVPTWTGQRG
ISGAPAGVKSRFGQKRKSNFSVQRPSSPSLKEKCQDGAMKKEKKDNVPEHFSGKAEDADA
LSGAPTSSSLLAKMRARNHLILPERLESENVSLPEASAPQPSATEHDDLLVEMRNFIAFQ
ARVDGQASTQEILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgccaaatgagagaatcccccacccaggtcaaactcaggagcaagactgtttacaaagt
cagtatgtcggtgatgatgaagaaatggcagtcaagcaagaaaatggtgtgccagccgcg
ggggtggaggaaagcctcccctcttgttcctctgataatgggctgtctgcttcggctgag
gggtgtgccttgggagttccaaggagagggccggccctgctgcagatcgacaggcatcag
atccaggctgtggagcagagtgctcaggcccttgaactgcagggtctgggtgtggacgtc
tatgaccaggatgtgctggagcagggtgtgcttcagcaggtggatgacgccatccatgaa
gctcgccgtgtggcccagcttgctgacacagagaaagagtaccagtcagtcctggatgac
ctcacgtcatgtacgacatccctcaggcaaatcaataaaattattgaacagcttagccct
caagctcccaccaacagagacatcaacaggaaactagattctgtaaaacgacagaagtac
aataaggaacaacagctaaagaagatcacagcaaaacaaaaacgtcttcaggccatcctt
ggaggagcagaggtgaaagttgaaatagattctgccagtttggaggaggatgcagagccg
gggccgtcttccctgggcagcatgctcatgccggctcaggagactgcgtgggaggagctc
atccgcacaggccagatgacgccttttggtacccagatccctcagaaacaggagaggaag
cctagaagactgatgcttaatgaagcgtcaggctttgaaaagtatttggcagatcaagca
aaactgtcttttgaaaggaagaagcaagctcgtaagaaaagactgacgagaaaagctccg
gcctcggctacttctgagtcgaatccaacactaaatgaaaaccagcaaaacaagagaagc
aaagttccctcgaaaatggataagcggttggaaaagcatatcaagaaactccagaggagg
gctcttcagttccaggggaaggtggggttgcaaaagagagccaaagccctggaagcaggt
atcaagagggaggacggagcctctgagagtgaagagtcggagtacttacccgaggaggag
gaggacaagatggctgaggccgacctgtccgaaggttgcgccgcttatgaactgaagcct
ccgctcaaaggtcggaaacggcagaagaaagtcacggtgcaggagatggatgaagacttt
ttcccgagttctggagaagaaagtgaagccggaggaagcggaagtcggaaagcagtgaga
tggcgagacgatggagatgaggattgttataagcagcgcttaaggagatggaataaactg
agactgcgagaccaagagaagtgtctaaagctggaggacaattccgaggacagcgatgct
gaatttgacgaaggttttaaagtgccaggtttcctgttcagaaagctctttaagtaccag
cagacaggtgtcaggtggctgtgggaattgcactgccagcaggcaggaggaattctggga
gacgaaatgggattgggcaagaccatccagataatcgccttcttggcaggtctgagctac
agcaagatcaggactcgtggttcaaattacaggttcgaggggttaggtccaactataatt
gtctgtccaacgacagtgatgcatcagtgggtgagagaatttcacacgtggtggcctcca
ttcagagtggcaatactgcatgataccggttcctatacccacaagaaggagaaactaatt
ggagatattgctcattatcatggaattctgatcacttcttactcctacattcgactgatg
caagatgacatcagcagacatgactggcattacgtgatcttggatgaaggacacaaaatt
cgaaatccaaatgctgccattacccttgcttgcaaacagttccgcacccctcatcgcatc
atcttgtcgggctcaccgatgcagaataacctgcgagagctgtggtcgctctttgacttt
gtcttcccgggcaagttaggaacgttgccggtgttcatggagcagttctctgttcccatc
accatggggggatattccaacgcttccacagtacaggtgaaaactgcatataagtgtgca
tgtgtcttaagagataccataaatccatacctgctgcggagaatgaagtcagatgtcaaa
atgagcctttctttaccagataaaaatgagcaggttttattttgccgtcttacagatgaa
cagcatgaagtctaccaaaatttcattgattccaaggaagttcacaagattctcaatgga
gagttgcagattttctctggacttgtagccctaaggaaaatatgcaaccacccagatctc
ttctctggaggtcccaggaatctcagaggtctcccagatgaggaattagaggaagatcag
tttggatactggaggcgctctgggaaaatgatagtggttgagtccttgttgaaaatatgg
cacaagcagggccagcgagtattgctgttttctcagtcaagacagatgctggacatactt
gaagtattccttagagcacgaaagtattcctacgtcaagatggacggtaccactaccata
gcttcaagacagccactgattacacgctacaatgaggacacgtccatatttgtgtttctt
ctgaccacgcgtgtgggcggcataggagtcaacctgacaggggcaaacagagtcatcatc
tatgaccccgactggaatccaagcacagacacacaggcccgggagcgagcgtggagaata
ggccagaagaagcaggtgactgtgtacaggctcctgactgcgggcaccattgaggagaag
atttaccaccgacaaatcttcaagcagtttttaacaaatagagtactaaaagatcctaaa
caaaggcgattcttcaaatccaacgatctttatgagctgttcaccctgactagccctgac
gcgtcccagagcactgagacaagtgctatttttgcaggaactggttcagatgttcagaca
cccaaacgccatttaaaaagaaaaatccaaccagcctttggaacagaacatggcgttctg
aattgtaaaaaattaccagattctgatatatctgcaaatgatgccacgtcacctgaagag
aagtctaagtttataggagctgaagtacctgcagtaactgctaattacagtgatcccctg
agagatgaccctcaaacaagtaataatctaactagcagtgatgtgcttttagaagagaag
tattggcaaataaatgcagtttccagactagaggagtcatcgaagatcagtggaaacagg
gagtgttcagattctccaagagacagtgaaacatgcaggacacctggtgaggaaggcact
gatgaaaagcaagatctttcttgtaaaggagagggctgccaggttcagtgtgaaggacag
agctgccaggttcagaaagagcctttttcagagaatgcgcaaatggggaataatttttat
aagcacaagtcaaaaacaaaacatcatgttgtggtagaagacgggaccctggagaaacgc
ctcagacggaaggagaagcctaagtgttctaagctttgcaaagacgccaagtttgaagga
actcgaattccacacttggtgaagaaaaggcagttccagaggcaagacagtgcagacgag
agtgaggcaaaggaacgaaacagtgatgattatgttttggaaaagcttttcaaaaaagca
gtcggcgtgcacagtgttatgaagcatgatgccatcatggatggagccagcgcagattat
atgctggtggaggccgaggccacgcgagtggcccaggacgccttgaaaacactgaggctg
tctcgtcagcagtgtctgggagcagcatccggagtgcccacctggacaggccagcggggg
atttctggtgcgccagcgggagtaaagagcagatttggtcagaagaggaagtctaacttc
tctgtccagcgtccttcttcaccgtctctaaaagagaaatgccaggatggcgctatgaag
aaggagaaaaaagataatgttcccgagcattttagtggaaaagcagaggatgcagacgct
ctgtccggggctcccacttcatcatcactcttggctaaaatgagagctagaaaccacctg
attttgccagagcgtttggaaagtgaaaatgtgtctcttcctgaggcttctgcccctcag
ccctctgccacagaacatgatgaccttttggtagaaatgagaaacttcattgcatttcag
gcccgtgttgatggccaggccagcacccaggagatcctgcaggagtttgagtccaagtta
tcagcatcacagtcttgtgtgtttcgagaactattgagaaatctttgcacttttcataga
acttcaggtggtgaaggaatttggaaacttaagccagagtactgctga
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integrated database retrieval system
