Trichechus manatus latirostris (Florida manatee): 101343281
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Entry
101343281 CDS
T05135
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04151
PI3K-Akt signaling pathway
tmu04510
Focal adhesion
tmu04512
ECM-receptor interaction
tmu04974
Protein digestion and absorption
tmu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101343281
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101343281
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101343281
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101343281
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101343281
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101343281
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101343281
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
101343281
NCBI-ProteinID:
XP_023594644
UniProt:
A0A2Y9RRU6
LinkDB
All DBs
Position
Unknown
AA seq
1418 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCQSQDVRQPGPKGQKGEPGDIKDIMGPKGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQLAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG
KPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG
ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG
APGAKGEAGPTGARGPEGAQGARGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG
KRGGRGEPGGVGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG
RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGTRGQPGVMGFPGPKG
ASGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPTGPAGERGEQGAPGPSGFQGLPG
PPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGLPGTPGTDG
PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG
PIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG
EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG
SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGPDG
PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPGPVGPPGLTG
PAGEPGREGSPGADGPPGRDGTAGVKGDRGEAGPVGGPGSPGPPGSPGPAGPTGKQGERG
EAGAQGPMGPAGPAGARGIAGPQGPRGDKGESGEPGERGLKGHRGFTGLQGLPGPPGPSG
DQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG
PPGPPGPGIDMSAFAGLGQREKGPDPLQYMQADEADGNLRQHDVEVDATLKSLNNQIESI
RSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPA
SVPKKNWWSSKGKERKHIWFGETINGGFHFSYGDDNLAPNTASVQMTFLRLLSTEGSQNI
TYHCKNSIAYMDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYSALKDGCTKHTGKWGKTV
IEYRSQKTSRLPIIDIAPMDIGGPDQEFGVDIGPVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcaaagccaggatgtccggcaaccaggaccaaagggacagaaaggtgaacct
ggagatatcaaggatattatgggacccaaaggacctcctgggcctcagggacctgcaggt
gaacaaggtcccagaggtgaccgtggtgacaaaggcgaaaaaggtgcccctggacctcgt
ggcagagatggagagcctggaacccctggaaatcctggcccccctggtcctcctgggccc
cctggcccccctggtcttggtggaaactttgctgcccagctggctggaggatttgatgag
aaggctggaggtgcccagatgggagtaatgcaagggccaatgggacccatgggacctcga
ggacctccaggccctgctggtgctcctggacctcaaggatttcaaggcaatcctggggaa
cctggtgaacctggagtttctggccccatgggtccccgtggtcctcctggaccccctgga
aaacctggtgatgatggtgaagctggaaaacctgggaaatctggtgaaagaggccctcct
ggccctcagggtgctcgcggcttcccaggaaccccaggccttcctggtgtcaaaggtcac
agaggttacccaggtctagatggtgctaagggagaagcaggtgctccaggtgttaagggt
gagagtggctcccctggtgagaatggttctccgggccccatgggtccccgtggtctgcct
ggtgagagaggacgaactggccctgccggtgctgcgggtgcccgtggcaacgatggtcag
ccaggccccgcaggacctccgggtcctgtgggtcctgctggtggtcctggcttccccggt
gctcccggtgccaagggtgaagctggccccaccggggctcgtggtcctgaaggcgctcaa
ggtgcccgaggtgaacctggtactcccggctcccctgggcctgccggtgcctctggtaac
cctggaactgacggaattcctggagccaaaggatcagctggtgctcctgggattgctggc
gctcctggcttccctgggccccgtggtcctcctggccctcaaggtgctactggtcctctg
ggcccgaaaggtcagacgggtgaacctggtattgctggcttcaaaggtgaacaaggcccc
aagggagagcctggccctgctggcccccaaggagcccctggccctgctggtgaagaaggc
aaaagaggtggtcgtggagagcctggtggcgttgggcccgttggtccccctggagaaaga
ggtgctcctggcaaccgtggtttcccaggtcaagatggtctggcaggtcctaagggcgcc
cctggagagcgagggcccagcggccttgctggtcccaagggagccaatggtgaccctggc
cgtcctggagaacctggccttcctggagcccggggtctcactggtcgccctggtgatgct
ggtcctcaaggcaaagttggtccttctggagctcctggtgaagatggtcgccctggtcct
ccaggtcctcaggggactcgtgggcagcctggtgtcatgggtttccctggccccaaaggt
gccagtggcgagcctggcaaagctggtgagaagggactgcctggtgctcctggtctgaga
ggtcttcctggtaaagatggtgagacaggtgctgcaggtcctcctggacccaccggacct
gctggagaacgaggagagcagggtgctcctgggccatctgggttccagggacttcctggc
cctcccggtcccccaggtgaaggtggaaaaccaggtgaccagggtattcctggtgaagct
ggtgctcctggccttgtgggccccaggggtgaacgaggtttcccaggtgaacgtggctct
cctggggcccagggccttcagggtgctcgtggcctccctggcactcctggcactgacggt
cccaaaggtgcttctggcccagctggcccccctggggctcaaggccctccaggtctgcag
ggaatgcccggtgagaggggagcagctggtatcgctgggcccaagggagacaggggtgat
gttggtgagaaaggccccgagggagcccccgggaaggacggtggaagaggtctgactggt
cccattggcccccctggcccggctggtgccaacggtgagaagggagaagttggacctcct
ggtcctgcaggaactgctggtgctcgaggtgctccgggcgaacgtggagagactggaccc
cctgggcctgctggattcgctggtcctcctggtgctgatggccagcctggtgccaagggt
gaacaaggagaggccggccagaaaggtgatgctggcgccccgggtcctcagggcccctca
ggagctcctgggcctcagggtcctactggagtgactggtcctaaaggagcccgaggtgct
caaggccctccgggagccaccggattccccggagctgctggccgcgtcggacctccaggc
tccaatggtaaccccggcccccccggcccccctggtccttctggaaaagatggtcccaaa
ggtgctcgaggagacagtggtccccctggccgagctggtgaccctggcctccaaggtcct
gccggagcccctggtgaaaagggagagcctggagatgatggtccctctggtcctgatggt
cctccaggtccgcagggtctggctgggcagaggggcatcgtcggtctgcctgggcagcgt
ggtgagagaggattcccaggcttgcctggcccatcgggtgagcctgggaagcagggagct
cctggctcatctggagaccgaggtccccctggccccgtgggtcctcctggcttgactggt
cctgctggtgagcctggacgagagggaagccctggtgctgatggccctcctggaagagat
ggtacagctggagtcaagggtgatcgtggtgaggctggtcccgtcggtggtcctggatcc
cccggacccccgggctctcctggcccagctggcccaactggcaagcagggagagcgagga
gaagctggtgcacaaggccccatgggacctgctggaccggctggagcccgaggaatagca
ggccctcaaggcccccgaggtgacaaaggagaatctggagagcctggcgagaggggactg
aagggacaccgtggcttcactggtttgcagggtctgcctggccctcctggtccttctgga
gaccaaggtgcttccgggcctgctggtccttctggccctagaggtcctcccggccctgtt
ggtccctccggcaaagatggctctaatggaatccctggccccattggacctcctggcccc
cgtggacgttcaggagaaactggccctgctggtcctcctggaaatcctggaccccctggc
cctccaggtccccctggtcccggcattgacatgtctgcctttgctggcctaggccagaga
gagaaaggccctgaccccctacagtacatgcaggctgatgaggcagatggcaacctgaga
caacatgacgttgaggtggacgccacactcaagtccctcaacaaccagattgagagcatc
cgcagccctgagggctcccgcaagaaccctgctcgcacctgccgcgacctgaaactctgc
caccccgagtggaagagcggagactactggattgaccccaaccagggctgcaccttggac
gccatgaaggtcttctgcaacatggagactggcgagacctgcgtctaccccaacccagcc
agcgttcccaagaagaactggtggagcagcaagggcaaggagaggaaacatatctggttt
ggagaaaccatcaatggcggcttccacttcagctatggagatgacaacctggctcccaac
actgccagcgtccagatgaccttcctacgcctgctgtccactgagggctcccagaacatc
acctaccactgcaagaacagcattgcctacatggatgaagctgccggcaacctcaagaag
gccttactcatccagggctccaacgatgtcgagattcgggctgagggcaacagcaggttc
acatacagtgccctgaaggatggctgcacgaaacacaccggtaagtggggcaagactgtc
attgagtaccggtcacagaagacctctcgcctccccatcattgacattgcacccatggac
ataggaggtcctgatcaggaatttggtgtggacatagggcctgtctgcttcttgtaa
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integrated database retrieval system
