Trichechus manatus latirostris (Florida manatee): 101343367
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Entry
101343367 CDS
T05135
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101343367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101343367
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101343367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
101343367
NCBI-ProteinID:
XP_004385220
UniProt:
A0A2Y9E174
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MALPSTRERKSPSATSAAKTDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQSGDEY
DFYRSFAGFQAFCETQGDRLLQCMSQVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVI
LERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNI
IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
IHQQRTQQVEQDMFAHPYQYELDYFTPPDSVLQKPQPQLYRPVEETPCHFISSLDELVEL
NEKLLNCKEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESFTDPA
IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKHYCSVESNKQYQ
LADWRIRPLPEEMLHYARDDTHYLLYIYDKTRLELWERGNGQPVQLQVVWQRSRDICLKK
FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPNPE
RLENVLFGPHDCSHAPPDGYPIIPTSGPVPVQNQASLFPDQKEEEASLDTKCLIATAVIT
LFNEPSAEENGKWPLTVAQKKAQSIMESFENPFRMYLPSLEHRAHISQAAKLDPSSKIYE
ISNRWKLASQVQVQKESKETAKKKAAEQTAAREQAKEEYKATAEQAMSVRQQATLENAAK
KRERTISDPRTTDQKQGKKRLKISKKPKDPDPAEKEFTPYDYSRSDFKAFAGNSKSKPSQ
FDPNKQTQSGKKCIAAKKLKQPTGNKSMSFPTGKSDRGFRHNWPKR
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttcccagtacccgagagcggaagtccccgtccgcgacgagtgcggccaagacc
gacggggagatggtgctgcctggcttcccggacgcagacagcttcgtgaagtttgctctt
gggtcagtggtagcagttaccaaggcatctgggggcctaccacagtctggtgatgagtat
gatttttaccgaagttttgctggcttccaggcattttgtgaaacacagggagataggttg
cttcagtgcatgagtcaggtaatgcagtaccatgggtgtcgcagcaacattaaggatcga
agtaaagtgactgagttggaggacaagtttgatttactagttgataccaatgatgttatt
ctggaaagagtgggtattttactggatgaagcatcaggtgtaaataagaatcaacagcct
gtcctccctgcaggattgcaggtccccaaaacaatcgtgtccagctggaaccggaaggca
ggagaatatagcaagaaaacaaaatctgaaactttccggctgcttcatgcaaaaaacatc
atccgacctcagctcaagtttcgagaaaagattgacaattccaacacgccatttcttcct
aaaatcttcatcaagcccaatgctcagaaacccttacctcaggcactctctaaagaaagg
cgggagcggccacaggatcgtcctgaggacttagatgtcccacctgccctggcagatttc
atccatcagcagagaacacagcaggttgagcaagacatgtttgcacacccttatcaatat
gaactagattacttcactccaccagattcagtccttcaaaagccacagccccagttatat
agacctgtagaagaaacaccgtgccatttcatatcctccctggatgagcttgtggagctc
aacgaaaagctcttgaattgtaaagagtttgctgtcgacttggagcaccactcttacagg
agcttcctaggactcacctgcctgatgcaaatctccactcgaacagaagacttcatcgtc
gacaccctggagctccgaagtgacatgtacattctcaacgagagcttcacagaccctgcc
attgttaaggtcttccacggtgctgactcagacatagaatggctacagaaagactttggg
ttgtatgtagtaaacatgttcgatacccatcaggcagctcgccttcttaacctgggcagg
cactcgctcgatcatctgctgaaacactactgcagtgtggaatcaaacaagcagtatcag
ctggctgattggagaatacgacctctgcctgaggaaatgctccactatgcccgggatgac
acacattacctcctttacatttatgacaaaacgaggctagagctgtgggagcgaggcaac
gggcagccagtgcagttgcaggtggtgtggcagcggagcagagatatctgcctcaagaaa
ttcatcaagcccattttcacagatgagtcctaccttgaactatataggaagcaaaagaag
cacctcaatacgcagcagttgacagcctttcagctgctgtttgcctggagggataaaaca
gcccgcagggaagatgaaagttatggatatgtactgccaaaccatatgatgctgaagata
gctgaagaactgcctaaggaacctcagggcatcatagcttgctgtaatccagtaccacct
cttgttcggcagcagatcaatgaaatgcatcttttaatccagcaggctcgagagatgccc
ctgctcaagtctgaagttgcagctggagtgaagaagagtggaccactgcccaatcctgag
agattggagaatgttctttttggacctcatgactgctcccatgccccaccagatggctat
cctatcatcccaaccagcggacctgtgccagttcagaaccaggcaagcctcttccctgac
caaaaagaagaggaggcctcactggataccaagtgcctgattgctactgctgtcatcaca
ttatttaacgaacctagtgctgaagaaaatggaaagtggccattaacagttgcacagaaa
aaggcccagagcataatggaatccttcgaaaatccatttcgaatgtacctgccctccctt
gaacaccgtgcccacatctctcaggcagccaagcttgacccatcgtctaaaatctatgaa
attagcaatcgttggaagcttgcaagccaggtacaggtacagaaagaatctaaagaaact
gcaaagaagaaggcagctgagcaaacagctgcccgggaacaggcaaaggaagagtacaaa
gccacagcggaacaagccatgtctgttcgacaacaggccacgctagagaatgctgctaaa
aagagagagcgaacaataagtgatccaaggactacagaccagaaacaagggaagaaacga
ctcaaaatttccaagaagccaaaggacccagatccagcagaaaaagagtttaccccttat
gactacagcaggtcagacttcaaggcttttgcaggaaacagcaaatccaaaccttcccag
tttgatccaaataagcagacccagtccggcaagaaatgcattgcagccaaaaaactcaaa
cagccaactggaaacaaaagcatgtcctttccaactggaaaatcagacagaggtttcagg
cacaattggccaaagagatag
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