Trichechus manatus latirostris (Florida manatee): 101343403
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Entry
101343403 CDS
T05135
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03018
RNA degradation
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101343403
09123 Folding, sorting and degradation
03018 RNA degradation
101343403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101343403
03041 Spliceosome [BR:
tmu03041
]
101343403
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101343403
mRNA degradation factors
5'-3' decay
Lsm complex
101343403
Spliceosome [BR:
tmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101343403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
101343403
NCBI-ProteinID:
XP_004389685
UniProt:
A0A2Y9EAN4
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgctttggagaactacatcaaccgaactgttgctgttattacgtctgatgga
agaatgattgtgggaactctgaaaggttttgaccagaccattaatttgattttggatgaa
agtcatgaacgagtattcagctcttcacagggagtagaacaagtggtattaggattatac
atcgtaagaggtgacaatgttgcagtcattggagaaattgatgaagagacagattctgcg
cttgatttggggaatattcgagcagaacctctaaactcagtagcacactga
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