KEGG   Trichechus manatus latirostris (Florida manatee): 101344202
Entry
101344202         CDS       T05135                                 
Name
(RefSeq) roquin-1 isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tmu03000]
    101344202
   04121 Ubiquitin system [BR:tmu04121]
    101344202
Transcription factors [BR:tmu03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    101344202
Ubiquitin system [BR:tmu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    101344202
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 Prok-RING_4 zf-CCCH zf-C3HC4_3 zf-C3HC4 zf-CCCH_UNK zf-C3HC4_2 FYVE zf_CCCH_4 zf-CCCH_4 Vesi_VP2 PaaA_PaaC Baculo_IE-1 zf-RING_4 zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 101344202
NCBI-ProteinID: XP_004372888
UniProt: A0A2Y9QQW7
LinkDB
Position
Unknown
AA seq 1134 aa
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGIEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGHLNEVGLPSAAILPDE
GAVDLPSRKPPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRIYPAQSYTREEMFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPTQIRPSYLREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPTFHQEEFLDEDLKIAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVDSKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAVA
PQGAPTKSINISDYSPYGTHGGWGSSPYSPHQNIPSQGHFNERERMSMSEATSHGKPLPS
AEREQLRLELQQLNHQINQQTQLRGLEAVSNRLVLQREANTLAGQPQPPPPPPPPKWPGM
ISSEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPESQNKVPAEDL
TLTFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq 3405 nt   +upstreamnt  +downstreamnt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacgattcgaaagcccatcagtttgggctgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagcttctccctgtgaactcagcattgctgcagctagtgggtgctcaggtccctgag
cagcagcccattaccttgtgtagtgggattgaagacacaaagcattatgaggaagcaaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgtccaatgcagaggaagctggtgactctg
gttcactgccaactagtggaagaagaaggcaggattcgtgccatgagggcagctcgatca
ttaggtgaacgaacagttacagagcttatcctccagcaccagaatcctcagcaactttct
tccaatctttgggcagcagtcagggctagaggctgccagttccttggaccagcaatgcag
gaagaagctcttaagttggttttgttggccttagaagatgggtctgctttgtcaagaaaa
gtcttggttctctttgtggtacaaagattggaaccacggttccctcaagcctctaaaact
agcattgggcatgttgtccagctcctctatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttaatgcagctgaaagaagaatttagaacttacgaagctctgcgg
cgagaacacgactcccagatagtgcagattgctatggaggcaggtttacgaattgcgcca
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcatcttttgcacaaagtgttcaggaactaacaattgct
ctccagaggactggagacccagcgaacttgaaccgactaagaccccatttggagctgttg
gcaaacattgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ctggttgctgtgcgtacagtggtgcatgggctggttgattatatccagaaccacagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcagagaggaggatgccctcgtggggccagctgtacatttgcacactctcag
gaggaactggaaaaatttcgtaaaatgaacaaacgcttagttcccagaagacccctgagt
gcctctttgggtcatcttaatgaggtgggcctgccttcagcagctatccttccagatgaa
ggtgcagtggatctgcctagcagaaaaccccctgctctgccaaatggaattgtatcagca
gggaacaccgtcacacagctaattccacgagggacggaccccagctacgattctagtctg
aagccaggaaagatagatcatctgagcagtagtgcccctggatcccctcctgacctactg
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccaacagatctgcctcccatgcctgtcaccaaaccacttcagatggtaccacgaggt
tctcagttatatccagcacaacaggcagatgtttattatcaggatcctcgaggagctgct
ccaccatttgaaccagcaccttatcagcagggtatgtactatactccaccaccacaatgt
gtgtcccgctttgtccggcctccaccatctgctcctgaacctggccctccgtacttggat
cattatccaccttacctccaagatcgtgtagtaaactcccagtatggcacacagccacag
cagtacccacctatgtacccacctcactatgatggccgtcggatataccctgctcagtct
tatacgagagaggagatgtttcgagaaagccctatacccattgagattccgcctgcagca
gtgccatcttatgttccagaatccagagaaagataccagcagatggagggttactatccg
gtggctccccatccaactcagatcagaccttcgtacctcagagagcctccttacagccgt
cttccacctcctccccagccccatcctagtttagatgagctacatcgccgaagaaaggaa
ataatggcccagctggaggaaagaaaggtcatctctccacctccttttgcaccttcacca
acattgcctcctaccttccaccaagaggaatttttggatgaagacttgaagatagctggg
aaatacaaaggaaatgattatagccagtactctccctggtcatgtgacaccattggctcc
tacattgggaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggacagtaaaggaatgagagaccagcgtttggatcttcagagaagagcagca
gaaaccagtgatgatgacctcatcccatttggagatcgaccaacagtatctaggtttggt
gccatctctcgaacttccaaaacgatatatcagggtgctggcccaatgcaggctgtggca
cctcagggagctcccacaaaatctattaacatttcagattatagtccatatggaacccat
ggtggctggggaagttccccatattcacctcatcaaaacataccttctcagggacacttc
aatgagagggagagaatgtccatgtcagaagcgaccagtcatggaaaaccccttccatct
gctgagagggaacagctacgactagaattacagcaactgaaccatcagattaaccaacag
acccagctacgtggactagaggctgttagtaacaggctggtgttgcagagggaggcaaac
accctggcaggccagccacagcctccaccaccacctccacctccaaaatggcctggaatg
atctcgagtgagcagttgagcttggaactgcaccaggtggaaagggaaattggaaagaga
actcgggaactgagtatggagaaccagtgttctctggacatgaaaagtaaattgaatacc
agtaaacaagcagaaaatggacagccagaatcacaaaacaaggttccagctgaggacctt
acattgacattcagtgatgtaccaaatggatcagccctgacacaagagaatatcagcctc
ctatcaaacaagaccagttccctgaacttatcagaggatcctgagggaggaggggataac
aatgactcccagagatcaggagttacacccagttctgctccctaa

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