Trichechus manatus latirostris (Florida manatee): 101344311
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Entry
101344311 CDS
T05135
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu05014
Amyotrophic lateral sclerosis
tmu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101344311
05022 Pathways of neurodegeneration - multiple diseases
101344311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmu03400
]
101344311
DNA repair and recombination proteins [BR:
tmu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101344311
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
CAMSAP_CH
Motif
Other DBs
NCBI-GeneID:
101344311
NCBI-ProteinID:
XP_004380762
UniProt:
A0A2Y9DUR3
LinkDB
All DBs
Position
Unknown
AA seq
2443 aa
AA seq
DB search
MAAAEVPGSVATAGGSCNTEAMDRVLSVLLVPIPAEATGRLGPRAQLHREQEVLGSLTAA
GSLQVLSLAPGGGGNCSLEGPFRQFVWENSPNRSTPTDKPKLLILSKKYELFIYEFNLKD
GRCDSTILFSCNGETLQKLIEDQSMSISLSSLRILSFHNNTSLLFINKHIVLHVLFPEGD
AEIRVLNSFTLDLAAPAVGGIVDTQLCRGILFVLNSLGWIYIFDVVDGTHVARVDLALHQ
EDVWDEQQPEPAEVSSFTSLKVSQDLDVVVVVSSSSSALALNLNLYFRQHPGHLLRERRL
EDLPIQGPKGIDEDDPVNSDYNMKLTKFSFQVDRSWKAQLSSLNETIKIPKPEVSHCTPW
FQDYLHLESFESGNHGTNVLSWAFMPQDTCGQYSFPRKDGHAKTSDPERSWKIVHVSDEE
EAAELECVSVTGFTALFTQATERKGCTIILWDLETQGMQCFSLGKIRIPIESDGDQQLCL
VLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNAWGRCSIPIHALEAGIENRQL
DTVDFFLKSKENLLNPSSNSSALDQFDHFPSDLYLRNVEELTPALDLLCSAIRESDSETQ
SKHFSEQLLNLTLSFLNKQIKELFVHTEELDEHLQKGVNILTSYINELRTFMIKFPWKQT
DALDEYDVNENVPKVKESDIWEKLSFEEVIANAILNNKIPEAQTFLRINSHSAQRLEELI
KIGLDLVFDSLKKNNIKEASELLKNMGFDVKDQLLKICFFTTDKNIRDFLVEILKEKNYI
SENEKRTIDFVHQVEKFYSGQFQENPQIQSFPRYWIKEQDFSKHKSVLDSVLKYHKDEFN
KQDHRIVLNWAQWWDRLTQESVLLPRISTEDYRSYSAEALWRHLTARHDWLSISLWIREF
QTQDSYASLQQNRWPPLTVDVIDQNTCCNSYMRNKILDKLARNGVFLASELGDFDLFLLR
LSRIGGVMQNTLPVQNYRTKEGWDFHSHFILYCLEHNLQHLLYVYLDFYKLSPSNCPFLE
KKELHEAHPWFEFLVQCRQVSSNLTDPKMIFQASLANAQILIPSNQASISSMLLEGHTLL
ALATTMYAPGGVSQVVQNEENENCLKKVDPQLLKMALMPYPKLKAALFPQNTAPNILPHD
ITLYHLIQSLLPFDPSRLFGWQSANTLAIGDASSELPHFCRPDLVNKYAIVERLNFAYYL
HHGRPSFAFGTFLVQELIKSKTPKQLIQRVGDEAYVLGLSSFHMPSVGAACVCFLELLGL
DSLKLRVDMKVANVILSYKCRNEDAQHSFVRESLAEKLSKLANGEKAAVEELLVLLEEGT
RNSIQQQEIKRLSSDSSSQWALVVQFCRLHNMKMSTSYLIECAKANDWLQFIIHSQLHDY
RPEEVKSLLHYFSPVLQDHLKLAFENLPSTFNCRMNSDLICSRSPQQLQKNEEQMTDFFA
VLLQCSEEPNSWCWLLAEAVKQQAPILSVLASCVQDASAVPCLCVWIITSVEDSVAAEAV
GHIQDPIEDHAWGLEDLSAACRVLLRRQKSRTLIRGFQLFFKDSPLLLMLEMYELCMFFK
NYEDAKAKLLEFQKSLETLETAATRAHPLTPASWLKEQVCFLVKLMLQQCQTQYELGKLL
QLFVGIEHLFSDGPDVKKLCALSQILKDTSIAISHAIITSYSTENFQQECRSILERLQTE
GQFALSRRVAELAELPVDNLVIEEITQEMQTLKHIEQWSLKQARIDFWKKCHENFKKNSI
SSKAASSFFSSQALEACASPAEEQQSGIEERHLLLTLAGHWLAQNDLVPLEELEELEKQI
WLCRITQHTLRGNQEDTDPRFSRQISTSGQLSFDSLASEFSFSKLAALNTSKYLELNGLP
SKDSCENRLDGKEEESLNFLIGRLLDDGCVREASRVCRYFGFYNRDVVLVLHCGALASGE
AGADDLHAEVQALLQRAELLEEEEESAVAARKVRSTSSLDTQSLKTAPPSDQVVADLKTL
TSKCLHGKNSCRQVLCLCELAQDLGCPYTDVAAWGGEAVLRAILASQQPDRCKRAQAFIS
TQGLKPDAVAELVAEEVTRELLTPSEGAGHKPTFSPAEESQTFLQLTMLCPDLTLVGRKL
LDKISSVPHGELACTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPNEEYGLVV
RLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLNYIKRCHPGDSEKHNM
IALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGHRLKQLLLKALTLMLDAAESYS
KDFCVRQALRCHRLTKLITLQIHFLNTGQNTMLINLGRHRLMDCIMALPQFYQASIVAQA
YDFVPDWVEILYQRVILKGDFNYLEEFKQQRLLRSSIFEEISNKCKQHQPTDAMEKNLKQ
SLTYCEDIYLYYKLAYEHKFYDVVNVLLKDPQTGCCLKDMLAS
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcagaggtgcccggaagtgttgctaccgccggcggtagttgcaacaccgag
gccatggatcgggttctatctgtgttgttggtgccgatccccgccgaggcaacggggcgg
ctgggaccccgcgcacaactgcacagagagcaggaggttttggggagcttgacggctgcg
ggcagcctccaagtgctttccttggcgccgggcggcgggggcaactgctcgctcgagggc
cccttccggcaatttgtgtgggagaattctcctaaccgcagcacaccaacagacaagccc
aaattgctaattcttagtaaaaagtatgaactgttcatctatgaatttaacttgaaagat
ggaagatgtgattcaaccattttgtttagctgtaatggggagacattacaaaagcttatc
gaagatcaaagtatgagtatttccttatcatctttgagaattctgtcatttcacaataac
acatcattattgttcatcaacaagcatatcgtcctgcacgttctgtttcccgaaggagat
gctgagattagagtactcaacagtttcacactggacttggctgcaccggcggtgggcggg
attgttgatacacagctgtgcagaggaattctttttgttttgaatagtttaggctggatc
tatatttttgacgttgtggatggtacacatgtagctcgtgtggatttagcacttcaccaa
gaagatgtgtgggatgagcagcaaccggagccagctgaggtgtcgtccttcacttcactg
aaggtgtctcaggacctagatgttgttgtggttgtcagctcctccagctccgcgcttgct
ctcaacttaaatttgtatttcaggcaacatccagggcacctactacgtgaaagaaggcta
gaagatcttcctattcaaggacctaaaggaatagatgaagatgatcctgttaactctgac
tacaacatgaaactgaccaagttttccttccaggttgataggtcttggaaagctcagcta
tcatcactgaatgaaacaataaagatccccaaaccggaggtttcccattgtactccgtgg
ttccaggattatttgcatttggaatcctttgaatctggtaatcacggtaccaatgtgctg
agttgggccttcatgccgcaggacacgtgtggccagtatagttttccacggaaagatggt
catgctaagaccagtgatccagaaaggtcctggaagatagtgcatgtcagtgatgaagag
gaagccgctgagcttgagtgtgtgtctgtgacgggattcaccgcactgtttactcaggca
acagaaaggaaaggctgcaccattatcctctgggatttggagacccagggcatgcagtgt
ttttccctcggcaaaatacgtattcctatagagagcgatggagaccaacagctgtgcctt
gttttgacagaaaacggactctctctgattttgtttggtttgactcaagaagagttttta
aatagactaatgatccacggaagtgccagcactgtggactctctctgtcatctcaacgct
tggggaaggtgctcaatccccatacacgcactagaggctgggatagaaaatcgtcagctg
gacacagtagatttctttttgaagagcaaagaaaatcttttgaatccatcctcaaattct
tccgcacttgatcagtttgatcactttccatccgatttatatttaagaaatgtggaagaa
ctaacaccagcattggatttactttgctcagcaattagagaaagtgattctgagacccaa
agcaaacacttttcagaacaactgcttaatcttacactgtctttccttaacaaacaaata
aaagagctttttgttcacactgaagagctagatgaacatctgcagaaaggagtgaacatt
ttgaccagctacataaatgagcttcgaaccttcatgataaaatttccttggaagcaaacg
gatgctttggatgaatatgatgtaaatgaaaatgtccccaaagtaaaggagagcgatata
tgggagaaactcagctttgaggaagttattgccaatgccattttaaacaacaaaatacca
gaggcacaaaccttcctcaggattaacagccattctgctcaaagactcgaggagctgatt
aaaataggcctagatttagtctttgacagtttaaaaaagaacaacataaaggaagcctcc
gagcttttgaagaatatgggttttgatgtaaaagaccagttgctcaagatatgcttcttt
acaactgacaaaaatatacgggactttctggttgaaattttaaaagagaaaaattacatt
tctgaaaatgaaaaaagaactatagactttgtgcatcaagttgagaagttttattcggga
cagttccaagaaaatccacagatccagtcctttcccaggtattggataaaggaacaagat
ttttccaagcacaaatctgttttggactcagtcctgaaataccataaagacgaatttaac
aaacaggatcatagaattgtgttgaattgggctcagtggtgggatcgactaacgcaagaa
tccgtccttcttcccaggataagtacagaagactacagatcttattctgctgaagccctc
tggagacacctcacagctcgtcatgattggttaagcattagcttgtggatcagagagttt
cagacccaggatagttacgcttcacttcagcagaacagatggccccctctgactgttgat
gtgattgatcagaatacttgctgcaacagctacatgaggaataaaattttagataagctg
gccaggaatggagtttttcttgcatcggaactgggagactttgacctcttcctcctaaga
ctgagccgtattgggggtgtgatgcaaaacaccctccccgttcaaaactacaggaccaaa
gaaggttgggatttccattctcacttcattctctattgtttggaacacaatctgcagcat
cttctttatgtctacctcgacttttacaaacttagtccttcaaattgtccctttttggaa
aaaaaagaattacatgaagctcacccctggtttgaatttttagttcagtgtcgacaagtt
tccagtaatttaacagatcccaaaatgatcttccaggctagccttgcaaatgctcagata
ctgattcctagcaatcaggccagcatcagcagtatgctgctggaaggacataccctcctg
gccctggctactacaatgtatgcccctgggggtgtcagccaggtggttcagaatgaagaa
aatgagaactgtttgaagaaagtggatccccaactcctgaagatggcattaatgccttac
cccaagctgaaagctgctctgtttccacagaacactgctcctaatatcctgccacacgat
atcacactctaccaccttatccagtcattattgccctttgatcccagcagattgtttggc
tggcagtctgccaacacactcgctataggagatgcatcaagtgagctcccacatttctgt
agacctgatctggttaataaatacgctatagtggaacgtctgaattttgcttattattta
catcatggacgaccatcatttgcatttggtacttttctagtccaggaattaatcaagagt
aaaactcccaagcagctgattcagcgagtaggcgatgaagcctatgtcttaggactctcc
tccttccacatgccttcagtaggagctgcctgcgtttgtttcctagaattgcttggcctt
gacagcctcaagctccgagttgatatgaaagtggccaatgtgattttgagctacaagtgt
agaaatgaagatgctcagcacagcttcgtcagagagtctctggctgagaaactatctaaa
ctggctaatggcgaaaaagcagccgtagaagagttgcttgttctcttggaagaaggcaca
cggaacagcatccagcagcaggaaataaagaggctatccagtgattccagcagccaatgg
gccctagtggtccagttttgcaggctccacaatatgaagatgagcacatcttacctcatt
gaatgcgccaaagcaaatgattggctgcagttcatcattcacagccagctccacgactat
cgtccagaggaggtgaaatcccttctgcactatttcagcccagtccttcaagaccactta
aagctggcttttgagaacttgccctccacgttcaactgcagaatgaatagtgacctgatc
tgcagcagatccccccagcagctccagaaaaatgaagaacagatgactgatttctttgca
gttttgctccagtgctcagaggagcccaactcctggtgctggctcctggctgaagcagtg
aaacagcaggcacccatcctgagtgtcctggcctcctgtgtccaggatgccagcgctgtt
ccttgtctctgtgtttggatcatcacatctgtagaggacagtgttgctgctgaagcagtg
gggcacattcaggacccgatagaggaccacgcctggggcctggaggacctctcggccgcc
tgtagagtgttactaagaaggcagaagagcagaactctcatcagaggcttccagctgttc
tttaaggattccccattattgttgatgctggagatgtatgaactgtgtatgttcttcaag
aactatgaggacgccaaagccaaactcctggagttccagaagagccttgaaactcttgaa
acggcagccacaagggcccacccgctcacccctgcctcgtggctgaaggagcaggtgtgt
tttcttgtgaagcttatgctgcagcagtgtcagacccagtatgagctggggaagctttta
cagctctttgttggaatagagcatctcttctctgatggtccagatgtgaagaagctgtgt
gccctcagccagattttgaaggatacatccatagccattagtcatgccattattaccagc
tacagcactgagaattttcagcaggaatgtagatccattttggaaagactgcagacagag
gggcagtttgctttatccaggagagtagcagaattagctgagttacctgtggacaacttg
gttattgaagagataactcaggaaatgcagaccctaaaacatattgaacagtggtctcta
aaacaagcaagaattgacttctggaaaaaatgccatgagaattttaagaaaaattccatt
tcaagcaaagcagcttcatcctttttctcatcccaagcccttgaggcctgtgcatcccca
gctgaggagcagcagagcggcatcgaggaacgccatctgctgctcaccctggccgggcac
tggcttgcccagaatgacctggtgcccctggaggagcttgaggagctggagaagcagatc
tggctctgccgcatcacccagcacaccctcagaggaaaccaggaggacacagaccccaga
ttttctcgacagatctcaactagtggccaactttcctttgatagcttagccagcgagttt
tccttctccaagctggctgctctgaacacatcaaaatacctagaactgaatggtcttcca
tccaaagattcatgtgagaatagactggatgggaaggaggaggagtcactgaactttctg
attgggcgcctgttggatgacggctgcgtgcgtgaagcaagtagagtgtgccggtacttt
ggtttctacaaccgagatgttgtcttggtgttgcactgcggggcgctggcctcaggggaa
gctggtgcggatgacctgcatgcagaggtccaggctctcctacagagggctgagctgctt
gaggaggaagaggagtctgctgttgctgcgaggaaagtccgaagcacttcaagtttggat
actcagtccttgaagacggcacctcccagtgaccaagtggtggctgacctgaaaacgctg
acaagcaaatgcctccatgggaagaactcctgccggcaggtcctctgtctgtgtgaactt
gcccaggatctgggctgtccctacacagatgtcgccgcctggggtggcgaggctgtgctc
cgggcaatcttggcttctcagcagcccgaccggtgcaagcgagcccaggccttcatcagc
acccagggcctcaagccagacgctgtggctgaactagtggccgaagaggtgacgcgggag
ctgctgaccccatcagagggagcaggacataagccgacattcagccctgcagaggaaagc
cagacatttctgcagctgaccatgctgtgcccggacctcacgttagtaggcaggaagctg
ttggacaagatttcctccgtcccccacggggagctggcttgcaccacagagctgctgatc
ctggcccatcactgcttcactctgacatgccacatggagggcatcatccgagtcctgcag
gccgcccggctgctcacagacaaccacttggcccccaacgaggagtacggactggtggtg
cggctcctcactggcattggaaggtacaatgagatgacgtacatatttgatctgctgcat
aaaaagcactactttgaagtgctgatgcggaagaagttggacccgagtggcaccctgaag
acagccctgctcaactacatcaaacgctgccaccctggggacagtgagaagcacaacatg
attgccctgtgcttcagcatgtgccgggagattggtgagaaccacgaggcagctgcctgc
atccagctgaaactgattgagtctcagccctgggaggagagcctcaaggatgggcacagg
ctgaagcagctgctgctgaaggctctgacgctgatgctggacgccgcagagagttactcc
aaggacttctgcgtgagacaggccctgcgctgtcaccggctcaccaagctgatcacacta
caaatccactttctgaacactggccagaacacaatgctcatcaacctgggccgccacagg
ctgatggactgtatcatggccctacctcagttctaccaggcttctattgtggcccaggcc
tatgactttgttccagactgggttgaaattctataccaacgagtgattcttaaaggagat
tttaattacttggaagaatttaagcagcaaaggttattaagatccagcatatttgaagag
atctcaaacaaatgtaaacaacatcagcctaccgatgcgatggagaagaacctgaagcag
tcactcacatactgtgaagacatctacctgtattacaagctggcatatgaacataaattt
tatgatgttgtaaatgtgcttctgaaggaccctcagacaggttgctgtctaaaggacatg
ctggcaagttag
DBGET
integrated database retrieval system
