Trichechus manatus latirostris (Florida manatee): 101345037
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Entry
101345037 CDS
T05135
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101345037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101345037
03041 Spliceosome [BR:
tmu03041
]
101345037
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101345037
Spliceosome [BR:
tmu03041
]
Complex B
Other components
Prp19-related factors
101345037
Complex C
101345037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
101345037
NCBI-ProteinID:
XP_004378443
UniProt:
A0A2Y9DPU6
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARISRPERPDLVFEEEDLPYEEEIMRNPFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggatctcgcggcccgagcggccggatcttgtcttcgaggaggag
gacctcccctacgaggaggagatcatgcggaacccgttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggtgccccgaagcccaggctcaatcagctgtatgagcgggcg
ctcaagctgctgccttgcagctacaagctctggtatcgctacctgaaggcacgccgggca
caggtgaagcatcgctgtgtgaccgaccctgcctatgaagacgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacggctgtggctagattattgccagttcctg
atggaccagggacgcgttacacacacccgccgtacctttgaccgtgctctccgggcgctg
cccatcacgcagcactcacggatctggcccctgtacctgcgcttcctgcgctcacacccg
ctgcctgagacggccgtgcgcggctaccggcgcttcctcaagctgagccctgagagcgca
gaggagtacattgagtatctcaagtcgagcgaccggctggatgaggccgcgcagcgcctg
gccaccgtggtcaacgacgagcgcttcgtgtccaaggctggcaagtccaactaccagctg
tggcatgagttgtgtgacctcatctctcagaacccggataaagtgcagtccctcaacgtg
gacgccatcatccgtgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggctgactactacatccgcagtggccacttcgagaaggctcgggacgtgtacgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
cagttcgaggagagcatgatcgcagctaagatggagaccacttcggagctggggcgtgag
gaggaggacgacgtggacctggagctgcgcctggcccgtttcgagcagctcatcagccgg
cggcccctgctgctcaacagcgtcctactgcgccagaacccccaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcatcaacacgtacacagag
gccgtgcagacggtggaccccttcaaggccacaggcaagccgcacacactgtgggttgcc
tttgccaagttttacgaggacaatgggcagctggacgacgcccgcgtcatcctggagaag
gccaccaaggtgaacttcaagcaggtggacgacctggcgagcgtgtggtgtgagtgcggt
gagctggagctccggcatgagaactacgaccaggcactgcggctgctgcggaaggcgacg
gcgctgcccgcccgccgggccgagtacttcgatggctcggagcctgtgcagaaccgcgtg
tacaagtccctgaaggtgtggtcgatgctcgctgacctggaagagagcctcggcaccttc
cagtccaccaaggctgtgtacgaccgcatcctggacctgcgcatcgccacgccccagatt
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggct
tacgagcgtggcatctcactgttcaagtggcccaatgtgtccgacatctggagcacctac
ctaaccaagttcattgcccgctacgggggccgcaagctggagcgggcacgggatctcttt
gagcaggcgctggatggctgccctcccaaatacgccaagacgctgtacctgctgtacgca
cagctggaggaggagtggggcctggcgcggcacgccatggccgtgtacgagcgcgccacc
cgggctgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgggccgcc
gagatttacggcgtcacccacacccgcggcatttaccagaaggccattgaggtgctgtca
gacgagcacgcccgggagatgtgcctgcgctttgccgacatggagtgcaagctcggcgag
atcgaccgtgcccgcgccatctacagcttctgctcccagatctgcgacccccggacgacc
ggggcgttctggcaaacgtggaaggacttcgaggtccggcatggcaatgaggacacaatc
cgggagatgctgcggatccggcgcagtgtgcaggccacctacaacacacaagtcaacttc
atggcctcacagatgctcaaggtgtcgggcagcgccacaggcactgtgtcggacctggcc
cccggacagagtggcatggacgacatgaagctgctggagcagcgggcagagcagctggcg
gcagaggcagagcgggaccagcctcctcgggcccagagcaagatcctctttgtgaggagc
gatgcctcccgtgaggagctggcagagctggcccagcaggccaaccccgaggagattgag
ctcggggaggacgaggatgaggacgagatggatctggaacccaatgaggtacggctagag
cagcagagcgtgccggccgctgtgttcgggagcctgaaggacgactag
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