Trichechus manatus latirostris (Florida manatee): 101345305
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Entry
101345305 CDS
T05135
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04151
PI3K-Akt signaling pathway
tmu04510
Focal adhesion
tmu04512
ECM-receptor interaction
tmu04820
Cytoskeleton in muscle cells
tmu04926
Relaxin signaling pathway
tmu04933
AGE-RAGE signaling pathway in diabetic complications
tmu04974
Protein digestion and absorption
tmu05146
Amoebiasis
tmu05165
Human papillomavirus infection
tmu05200
Pathways in cancer
tmu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101345305
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101345305
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101345305
09142 Cell motility
04820 Cytoskeleton in muscle cells
101345305
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101345305
09154 Digestive system
04974 Protein digestion and absorption
101345305
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101345305
09162 Cancer: specific types
05222 Small cell lung cancer
101345305
09172 Infectious disease: viral
05165 Human papillomavirus infection
101345305
09174 Infectious disease: parasitic
05146 Amoebiasis
101345305
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101345305
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tmu04147
]
101345305
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101345305
Exosome [BR:
tmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101345305
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101345305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101345305
NCBI-ProteinID:
XP_012412893
UniProt:
A0A2Y9G1D4
LinkDB
All DBs
Position
Unknown
AA seq
1643 aa
AA seq
DB search
MRGDCGGSGCGKCDCHGVKGQKGERGLPGLQGVIGFPGMQGPEGPHGPPGQKGDAGEPGL
PGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPIGPPGSPGYIGN
PGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGPPGTPGSPGFPGLQGPVGPPGLTGPPG
PPGPPGPPGEKGQMGLSFQGPKGDKGEQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEP
GFQGMPGVGEKGEPGKPGPRGKPGKDGEKGEKGSLGFPGDSGFPGLSGQPGLKGDKGEAG
PPGPPGIVIGTGPLGEKGERGFPGAPGLRGEPGPKGFPGIQGLPGPPGFPIPGQAGAPGF
PGERGEKGDRGFPGVSLPGPSGRDGLQGPPGPPGPPGQPGHTNGIVECQQGPPGDQGPPG
RPGQPGLTGEVGEKGQKGESCLDCDTRGVRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRD
GLEGLPGPQGSPGLMGQPGAKGEPGEIYFDVRLKGDKGEPGFPGQPGMPGRVGTPGRDGL
PGLAGPKGSPGSVGLKGERGPPGGVGFPGSRGDIGPPGPPGFGPIGPIGDKGQAGFPGNP
GPPGLPGPKGEAGKTVPLPGPPGADGLPGSPGLQGPQGDRGFPGAPGRPGGPGEKGSVGQ
PGIGFPGPPGPKGIDGLPGDVGPPGNPGRPGFNGLPGSPGVPGQKGEPGVGLPGLKGSSG
LPGIPGTPGEKGNIGEPGIPGEHGAIGPPGLQGIRGDSGPPGLQGPRGSPGVPGIGPPGV
MGPPGGQGPPGSIGPPGVKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQAGLPGLPGQQ
GTPGLPGFPGPKGEMGVIGTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGYKGDK
GDVGLPGKPGLMDKVDMGSMKGQKGDQGEKGHIGPSGDKGSRGDPGTPGVPGKDGQAGHP
GQPGPKGDPGISGMPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGSQGTPGLPGEKGTK
GEKGQAGQPGIGIPGRPGEKGDQGLAGFPGGPGEKGEKGSTGIPGMPGTPGPKGVPGHVG
YPGSPGLPGEKGDKGLPGLDGIRGVKGEAGLPGKPGPTGPAGQKGEPGSDGIPGSAGEKG
EPGLPGRGFPGFPGTKGEKGSKGDVGFPGLAGSPGIPGPKGEQGFMGPPGPQGQPGLPGA
PGQPVEGPKGDRGPQGQPGLPGHPGPMGPPGLPGLDGLKGEKGNPGWPGAPGVSGPKGDP
GFQGMPGIGGSPGITGSKGDVGPPGVPGFQGQKGLPGIQGVKGDQGDQGFPGSKGLPGPP
GPPGPYHVIKGEPGLPGPQGPAGLKGLQGLPGPKGQQGVTGLVGLPGPPGIPGFDGAPGQ
KGEPGPFGPPGPRGFPGPPGADGPPGSMGPPGTPSVDHGFLVTRHSQTIDDPQCPPGTKI
LYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTP
EPMPMSMAPITGDNIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPSGWSSLWIGYSFVMH
TSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPT
PSTLKAGELRTHVSRCQVCMRRT
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtgattgtggtggatctggctgtggaaaatgtgattgtcatggagtgaaagga
caaaagggggaaagaggcctcccaggattacaaggtgtcattggttttccgggaatgcaa
ggacctgaaggaccacatgggccaccaggacaaaagggtgatgctggagagcctggactg
ccaggaacaaaagggacaagaggacctccaggagcctctggttacccaggaaacccagga
cttcctggtattcccggccaggatggtccaccaggtcctcctggtatcccaggatgcaat
ggtacgaagggtgaaagagggcctattgggcctcctggttcccctggatacattggaaac
cccggacctccagggttgccaggaatgaagggagatccaggtgaaatacttggccacgtg
cctggtacgctgttgaaaggtgaaagaggatttcctggccctccaggaacaccagggtcc
ccaggattcccagggctgcaaggtcctgttggccctccaggacttactggaccaccgggt
cccccaggccctcctggccctccaggtgaaaaggggcaaatgggcttaagttttcaagga
ccaaaaggtgacaagggcgagcaaggggtcagtgggcctccaggagtgccaggacaagct
caagttcaagaaaaaggagacttcgctaccaagggagaaaagggtcaaaaaggtgaacct
ggattccagggcatgccaggggttggagagaaaggtgaacctggaaaaccaggcccccga
ggaaaacctggcaaggatggtgaaaaaggagaaaaagggagtctaggctttcccggtgat
tcagggttccctggactttctgggcaaccgggcttaaagggggacaaaggcgaagcaggt
cctccaggcccgcctggaattgttataggcacagggccactgggagaaaaaggggaaagg
ggcttcccaggagctccagggttaagaggagagccaggcccaaaaggtttcccaggaata
caaggtcttccaggccctccaggcttccccataccaggacaagccggtgctccaggcttc
ccgggtgaaagaggagaaaaaggtgaccggggatttccaggcgtgtctttacctggacca
agtggaagggatggactccaaggccctcccggaccccccggaccccctggccagccaggc
cacacaaatggaattgtggagtgtcaacagggaccacccggtgatcagggtcccccagga
cgtccagggcagccaggattgacaggcgaggttggtgagaaaggtcaaaaaggagagagt
tgcctcgactgtgatacaagaggagtccgggggcctccagggccccagggacccccagga
gaaataggtttcccaggtcagccgggagccaaaggagacagaggtttacctggaagggac
ggtctggaagggctgccgggaccacaaggctcgccagggctcatgggccagccaggggcc
aagggcgaacctggagagatttacttcgacgtacgactgaaaggtgacaagggagagcca
ggttttccaggacagcctggtatgccggggagagtaggaacccctggaagagatggcctt
cctggtcttgctggacccaaaggttcaccgggctcagtaggattaaagggagaacgtggc
cctcctggaggagttggattccctggaagtcgtggtgatatcggccctcctggtccacca
gggtttggtcctattggcccaattggtgacaaaggacaagcaggctttcctggaaaccct
ggaccgccaggcctcccaggtccgaagggtgaagccggaaaaactgttccgttacctggc
ccccctggagcagacggacttccagggtccccaggtttacaaggaccccaaggtgacaga
ggttttcctggggccccagggaggccgggaggcccaggagagaagggctctgttggccag
ccaggaattggatttccagggcctccgggccccaaaggtattgatggcttgcctggagat
gtgggtcctccagggaacccaggtcgcccaggattcaatggcttacctggtagcccaggt
gtgccgggtcaaaagggagagcctggagttggtcttccaggactgaaaggatcgtcaggt
cttcctggcatccccggcacacctggggaaaaggggaatattggtgaacctggcattcct
ggagaacatggtgccatcggccctcctgggcttcaggggatcagaggtgactcaggacct
cctggattgcaaggtcccaggggatctccgggagttccaggaataggcccccctggagtc
atgggcccccctggaggacagggaccaccagggtcaataggccctcctggagtaaaagga
gagaagggtttccctggattcccaggactggacatgccaggccctaaaggagataaaggg
tctcaaggacttcctggcttaactggacaagcggggctccctggccttcctggacaacag
ggaactcctggacttccaggatttccaggtcccaaaggagaaatgggcgtcatagggacc
cccgggcagccaggttctccaggaccagtgggtgctccaggattacccggtgaaaaaggg
gatcatggcttcccaggctcctcgggacccaggggagaccctgggtacaaaggtgataaa
ggggatgtcggtctccctggaaaacctgggttaatggataaagtggacatgggcagcatg
aaagggcagaaaggagaccaaggagaaaaaggacatattggaccatctggtgacaaagga
tccagaggagacccgggaactccgggagtgcctggaaaggacggacaggcagggcatcct
gggcaaccaggacctaaaggtgatccaggtataagtggaatgccaggtgctccgggactt
cctggaccaaaaggatcagttggtggaatgggcttgccaggaacacctggagaaaaaggg
gtgcccggaatcccaggctcccagggaacccctggcttgcctggagaaaaaggcacgaaa
ggagagaaagggcaggcaggtcaacctggcatcggtatcccgggccgacccggcgagaag
ggagatcaagggctggcaggtttcccaggaggccctggtgagaagggagagaagggcagc
actggcattccaggcatgcctgggaccccgggccctaaaggcgtaccggggcacgtaggc
tatccaggaagcccgggcttgcctggagaaaaaggtgacaaaggactgccaggcttggac
gggatccgtggagtcaaaggagaagcaggtcttcctgggaagcccggccccacgggtcct
gccggccagaaaggggagcccgggagtgatggaatcccagggtcggcgggagagaagggc
gaaccaggtctaccaggaagagggttcccagggttcccagggaccaaaggagaaaaaggt
tcaaagggtgatgtgggtttcccaggattggctgggagcccaggaattcctggacccaaa
ggagagcaaggattcatgggtcctcctgggccacaaggacaaccaggtttacctggcgct
ccaggtcaacctgtggagggacctaagggagaccgaggacctcagggacaacctggcctg
ccagggcatccgggacccatggggcctccaggacttccagggcttgatggactaaaaggt
gaaaaaggaaatccaggctggccaggggctcctggtgtttcaggacccaagggagatcca
ggattccaaggaatgcctggtatcggtggctctccaggaatcacaggttccaagggtgat
gtggggcctccaggtgttccaggatttcagggtcagaaaggtctccctggcatccaggga
gttaaaggagaccaaggagatcaaggttttccgggatctaaaggtcttccaggcccccct
ggccccccaggtccttaccatgtcatcaaaggagagccagggctccccggccctcaggga
ccagcaggtctaaagggacttcaggggcttccaggccctaaaggacagcaaggtgtgaca
ggactggtgggtttgcctggacctccaggtattccagggtttgatggtgcccctggccag
aaaggagaaccggggccttttgggcctccaggtccaagagggtttcctggtccaccaggt
gctgatgggccgccaggatccatgggccccccaggcaccccatctgttgatcacggcttc
cttgtgaccaggcacagtcaaacaatagatgacccgcaatgtcctcctgggaccaaaatt
ctttaccatgggtactctttgctctatgtgcaagggaatgaacgggcccatggccaagac
ttgggtacggctggcagctgcctgcgcaagtttagtacaatgccctttctgttctgcaat
atcaacaacgtgtgcaattttgcgtccagaaatgactattcctactggttgtctactcct
gagcccatgcccatgtctatggcgcccatcactggggacaacatcagacccttcattagc
aggtgtgccgtgtgtgaagcacctgccatggtcatggccgtgcacagccagaccatccag
attccgcagtgccccagcggatggtcttccctttggattggctattcctttgtcatgcac
accagcgctggtgccgaaggttctggccaagccctcgcatcacccggctcctgtctggaa
gaatttagaagtgcgccattcattgagtgccacggccgtggaacctgtaattactacgca
aatgcttacagcttctggcttgccactatagagagaagcgagatgttcaagaagcctact
ccatcaaccttgaaggcaggggaactccgcacccacgtcagccgctgccaagtttgtatg
agaagaacataa
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