Trichechus manatus latirostris (Florida manatee): 101345564
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Entry
101345564 CDS
T05135
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04151
PI3K-Akt signaling pathway
tmu04382
Cornified envelope formation
tmu04510
Focal adhesion
tmu04512
ECM-receptor interaction
tmu04518
Integrin signaling
tmu04820
Cytoskeleton in muscle cells
tmu04926
Relaxin signaling pathway
tmu04933
AGE-RAGE signaling pathway in diabetic complications
tmu04974
Protein digestion and absorption
tmu05146
Amoebiasis
tmu05165
Human papillomavirus infection
tmu05200
Pathways in cancer
tmu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101345564
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101345564
04518 Integrin signaling
101345564
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101345564
09142 Cell motility
04820 Cytoskeleton in muscle cells
101345564
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101345564
09154 Digestive system
04974 Protein digestion and absorption
101345564
09158 Development and regeneration
04382 Cornified envelope formation
101345564
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101345564
09162 Cancer: specific types
05222 Small cell lung cancer
101345564
09172 Infectious disease: viral
05165 Human papillomavirus infection
101345564
09174 Infectious disease: parasitic
05146 Amoebiasis
101345564
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101345564
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tmu04147
]
101345564
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101345564
Exosome [BR:
tmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101345564
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101345564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101345564
NCBI-ProteinID:
XP_004383012
UniProt:
A0A2Y9DXM9
LinkDB
All DBs
Position
Unknown
AA seq
1710 aa
AA seq
DB search
MSVASTGGGERFVIPFRVFSSSTSHADLPLKPGVKKFNVPCGGRDCSGGCQCYPEKGGRG
QPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGITGPKGDVGARGVSGFPGADGIPG
HPGQGGPRGRPGYDGCNGTAGDAGQQGPPGSVGAPGYPGPQGPKGQKGEPYALSKEDRDK
YRGEPGPPGLVGFQGPPGRPGYVGPMGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGEKGE
KGDVGLPGPNGIPSDNDRAITGPIKEVIHPDQYKGEKGSEGEPGIKGISLKGEEGIVGFP
GLRGPPGFDGEKGLPGQKGSRGLDGFQGPDGPQGPKGEAGDRGPPGPPAYSPHPSLAKGA
KGDTGFPGDRGEPGARGEPGDPGPPGPPGISIGDEDEKRGLPGEMGPKGFIGDPGIPALY
PGPPGADGSPGLQGLPGPPGLPGPDGFLFGLKGVSGTVGYPGPSGFPGARGQKGWKGDAG
DCRCAGDQFIEGLPGLPGPKGFPGANGEPGRKGEQGDQGQHGIPGFPGFKGVPGATGVPG
PKGIKGDFRTITTKGDKGQPGIPGVPGMKGDDGVPGRDGLDGFPGLPGPPGDGIKGPTGD
AGYPGVPGTKGIPGETGPPGLGLPGPKGKHGFPGDVGIPGSPGFPGPPGPPGTPAQIDCE
TGVKRPIGAAGQDAVQPGCVGGPKGSPGLLGPQGPTGAKGLRGVPGFSGPDGDPGLKGFP
GDPGREGFPGPQGFVGARGSKGATGLPGPDGQPGPVGLPGPVGPPGERGLPGEVLGARPG
PRGDAGLPGHPGLKGQPGERGPPGFRGSQGMPGMPGLKGQPGFPGPSGQAGLPGPPGQHG
FPGAAGQPGPLGLPGAPGHGGLPGDRGVPGDTGAPGPVGMKGLSGDRGDAGLLGERGHPG
NPGFKGVAGMPGLPGSKGDRGSPGMDGFQGMFGLKGRPGYPGSKGEAGFFGLPGQKGLAG
EPGVKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGSKGELGLKGFQGMPGTPGLSGV
PGLPGKPGHIKGTKGDTGVPGVPGSPGLPGVSGPPGIIGFPGFTGSRGDKGTPGRAGLFG
ETGQTGDFGDAGDTINLPGSPGLKGERGITGTPGQKGVFGEKGAEGNLGFPGIAGLKGVP
GPPGQKGQTGFPGLTGLQGPQGDPGRIGLPGEKGDDGWQGVPGLPGFPGIRGISGLHGLP
GTKGLLGFPGADISGDPGFPGTAGDRGDPGEPNTFPGPAGIPGQKGEQGAPGERGPLGSP
GLQGFPGITPPSNISGLPGDQGVPGIFGLQGYRGPPGPPGPAALPGGKGDTGNPGAVGNP
GTKGWVGDPGPQGRPGVFGLPGEKGPRGEQGFMGNTGATGSVGDRGPKGPKGDRGLMGPP
GASGSPGIAGIPQKIAAEPGTLGPHGRRGLPGAPGEMGPQGPPGEPGLRGATGKSGPQGR
GGVSAVPGFRGDQGPMGHQGPIGQEGETGRQGSPGLPGMPGRSVSIGYLLVKHSQTDQEP
MCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICYYASRND
KSYWLSTTAPLPMMPVAEDEIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIG
YSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIPEQ
SFQGSPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtggctagcactggtggaggtgagaggtttgtcatcccgttcagggtcttctca
agttccacctctcatgctgaccttcctctgaagccgggcgtgaagaagtttaacgtcccc
tgtgggggaagagactgcagcgggggctgccagtgttatccagagaaaggaggacggggt
cagccagggccagtcggcccccagggatacaatgggcccccaggattacaaggtttccca
ggattgcagggccgaaaaggtgacaaaggtgaaagaggagctcccgggataacaggccca
aaaggagacgtgggagcaagaggcgtttctggattccctggtgctgatggaattcctgga
catccagggcaaggtggacccagaggaagacctggttacgacggctgcaatggaacggca
ggagatgcaggtcaacagggtcccccaggttctgtgggggctcccggctaccctggacct
caaggacccaaaggacaaaaaggtgaaccttacgcattatccaaagaggatcgtgacaaa
tacaggggtgaacctggaccacctggattggtcggtttccaggggcctcctggccgccct
gggtatgtgggacccatgggtccagttggagctcctgggagaccaggaccacccggaccc
cctggaccaaaaggacagcctgggaacagaggacttggattttatggagaaaaaggtgaa
aagggtgatgtaggactgccaggacccaatggaattccatcagacaacgatcgtgccatc
actgggcccataaaagaagtgattcacccagatcaatataagggtgaaaaaggaagtgaa
ggggaaccaggaataaaaggcatttccttgaagggagaagaaggaatcgtgggctttcca
ggactacggggtccccctggcttcgatggtgaaaaaggattaccaggacagaaaggaagc
agaggactggatggtttccaaggccctgatggaccccaaggacccaagggagaagcgggc
gaccgaggccccccaggaccacccgcctactcgcctcatccttccctggcaaaaggtgcc
aaaggtgacacaggattcccaggagatcgtggggaaccaggagcccggggtgagccagga
gaccccggcccaccaggtccccctggtatatccatcggagatgaagatgagaagagaggc
ttaccaggcgaaatgggacccaaaggcttcataggagaccccggcatccctgctctgtac
cccggaccaccaggagctgatggcagtccagggctccaaggactcccaggaccccccggg
ctacctggaccagatggttttcttttcggacttaaaggagtgtcaggaacagtgggctac
ccagggccttctgggttccctggggctcgtggacagaaaggatggaaaggtgatgccggg
gactgtagatgtgccggagatcagtttatcgagggtcttccagggctgccaggacccaag
ggttttccaggtgccaatggagaaccagggaggaaaggggagcagggcgaccagggccag
cacggcattcccggtttcccggggttcaagggagtccctggtgccactggagttcctggg
cctaaaggaataaagggagacttcagaacaatcacaaccaaaggtgacaagggacaacca
ggtatcccaggtgtgcctggaatgaaaggtgatgatggggtcccaggccgtgatgggctc
gatggattcccaggcctccccggtcctcctggtgatggcatcaaaggccctacaggggat
gcaggttatccaggagtacctggaactaagggaattccaggagaaacaggtcctccagga
ctaggcttaccaggaccaaaaggcaagcatggttttccaggagatgttggaataccggga
tcaccaggctttcccggccctcctggccccccaggcactccagcacaaatagattgtgag
acaggtgtgaaaagacccattggagctgcaggacaagatgctgtccaaccaggttgtgtt
ggagggcccaaaggatcacctggcttgctgggaccacaaggccccacaggtgccaaaggc
ctcagaggagtaccgggattctcaggacccgatggagatccagggctcaagggtttccca
ggagatccaggccgtgaaggattcccaggaccacagggatttgtgggagctcgaggatcc
aaaggtgcaacgggcctccctgggccagatggacagccaggtcccgtaggcctgccaggg
ccagtagggccaccaggtgaaaggggacttcctggagaagtcctaggagcccggcctgga
ccccggggggatgctggactgcccggacacccagggctgaagggccaacctggagagaga
ggccctcctggattcagaggaagccagggaatgcccgggatgccggggctgaagggtcag
ccgggcttcccaggaccttccggccaggcaggactgcccggaccaccgggacagcatgga
ttcccaggagctgctggccagccagggcccttgggactgccaggtgccccaggccatgga
ggtctgcctggtgaccgaggggttccaggagacacaggtgcccctggccccgtgggcatg
aaaggtctctctggtgacagaggggacgctggcttattgggtgagagaggccatccagga
aaccctggattcaaaggagtggccggaatgcctggtctccctgggtcaaaaggggacaga
ggttcacctggtatggatggtttccaaggcatgttcgggctgaaaggaagacccggatat
ccaggaagcaaaggggaggctggattttttggacttcctggtcagaaaggtctggctggt
gaaccaggtgttaaaggcagccgtggggatcccggccccccaggaccaccccccatcatc
ctgccgggaatgaaagacattaaaggggaaaaaggagatgaggggcctatgggatcgaaa
ggagaactgggcttaaaagggtttcaaggcatgccagggacccctgggctgtcaggagtc
cctgggttacccgggaagcccggccacatcaaaggaacgaaaggagacactggagtcccc
ggcgtgcccggctccccaggcttgcccggagtgagtggtccccctggaattataggattt
ccagggttcacggggagtaggggtgacaagggcactccggggagagctggccttttcggg
gagactggacagacgggtgatttcggtgatgctggagacaccataaatttaccaggaagc
ccaggcctgaagggagaacgaggcatcactggaaccccaggtcagaagggagtctttgga
gagaaaggagcagagggcaaccttggcttccctgggatagcaggcctgaaaggagtcccg
ggtcctcctggacagaaaggacaaacaggcttcccagggttaacaggacttcaaggacca
cagggggatccaggacggattggactgcctggtgaaaaaggagatgatggttggcaaggg
gttccgggtttgccaggttttccgggcatccgaggaatcagcggattacatggcctgcca
ggcaccaaaggccttctgggattcccaggtgcagacatcagtggggacccaggtttccca
ggtactgctggggacagaggtgacccaggagagcccaacacctttccaggccctgcaggg
ataccaggacaaaagggggagcaaggagcaccaggggaacgaggcccacttgggagtcca
gggctgcaggggtttccgggcatcactccgccttccaacatctctggcttacctggtgac
caaggggttccggggatatttggcctgcagggttaccgaggcccgccaggaccacccgga
cctgctgctcttcctggcggcaaaggagatactgggaatcccggagctgtgggaaaccca
gggaccaaaggatgggtaggagaccctggaccccaaggcagacctggtgtgtttggtctc
cctggagaaaaaggacccagaggtgaacaaggattcatgggaaacacgggtgcgacagga
agtgtgggagacagaggccccaaaggacccaaaggagacagaggactcatgggtcctcct
ggtgcttcaggatccccagggattgcaggaatcccccagaagattgctgccgaacccggg
acgttgggtccccatggaaggagaggtcttcctggtgcgcctggagagatggggccccag
ggccctccaggagaaccaggtttgcgtggggcaacaggaaagtcaggaccccagggaaga
ggtggcgtgtctgctgtcccaggattccggggagaccaaggacccatgggccatcagggg
ccaattggccaagaaggggagaccggccgccaggggagccccggcctgcccggcatgccg
ggtcgcagcgtcagcatcggctacctcctggtgaagcacagccagacagaccaggagccc
atgtgccccgtgggcatgaacaagctctggagtggatacagcctgctgtactttgaaggg
caggagaaagcccacaaccaggatctgggactggcaggctcctgcctggcacggttcagc
accatgcctttcctgtactgtaaccccggcgacatctgctactatgccagccggaatgac
aagtcctactggctctccaccactgccccactgcctatgatgcctgtggccgaagacgaa
atcaagccctacatcagccgctgctctgtgtgcgaggccccggctgtcgccattgctgtc
cacagccaagatgtgtccatcccccactgcccggccgggtggcggagtttgtggatcggc
tattccttcctcatgcacacggcggcgggggacgaaggtggcgggcagtcactggtgtcc
ccgggcagctgtctggaggacttccgggccacacctttcatcgagtgcaacgggggccgc
ggtacctgtcactactatgccaacaagtacagcttctggctcaccaccatccccgagcag
agcttccagggctccccgtccgccgacaccctcaaagccggcctcatccggacgcacatc
agccgctgccaggtgtgcatgaagaacctgtaa
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integrated database retrieval system
