Trichechus manatus latirostris (Florida manatee): 101346885
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Entry
101346885 CDS
T05135
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X4
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101346885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101346885
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101346885
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101346885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
101346885
NCBI-ProteinID:
XP_004371584
UniProt:
A0A2Y9DC28
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLGGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPDFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITATTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSAAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSSEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgattcaggagtgcgcgtcg
ctgattacaaagccaaattttatctcgacgctttcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcggat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gagcagatagacgcttttcttaagacgttgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttatactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctctggctgacttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccgttacagagtatctctgctcctggaagtggcatc
tggagtgatgggaaagataaaagtgatggagcacaggcacatacatggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccaagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggt
attcaaagaggtctgggaatggaagtgttcccggtagacctcatatatagaccttggaaa
cacgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgt
tttgctgactatccctgtcatactgttgcaactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctt
gcagaggttggacagtatgaacaagtcaaacagctcttcagcttccctatcaagcactgc
ccagacatgttggtattggccttactacaaattaacacctcctggcacacgttgcgccat
gaactcatctctactctgatgccaattttccttggaaaccaccccaactctgctattatt
ttacattatgcatggcacgggcaggggcagtctccctcaattcgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattagagagcatggggagccctttatccaggcatgtatgaccttttta
aagagacgatgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtctacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaactgcagtaatgtt
atgaacaaggccagacaacctccacctggagttatgccaaaaggacgccctcccagtgct
agcagcttagatgctatttctcctgttcagattgaccctcttggtggaatggcatctctt
agtataggtggttcagctgccccccacacccagagtatgcagggttttcctccaaatttg
ggttctgccttcagtacccctcagtcaccagcaaaagcatttccacccctttctacccca
aaccagacaactgcattcagtggtattggaggactttcgtcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
agcgacccttttgtacagagaaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcagacttgtctcaggtgtggccagaagcaaaccagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catcctaccatgtctgttgatgaggtattagaaatgctacagaggtttaaagactctact
ataaagagagaacgagaagtatttaactgtatgctgaggaacttgtttgaagaatatcgg
tttttcccccagtaccccgacaaggagctacatataacagcttgcctgtttggtggaata
atcgaaaaaggactggtcacatacatggccctaggtctggccctgcgatatgtccttgaa
gccttacgcaagccttttggatccaaaatgtattatttcgggattgctgctttagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcaattcccacatcatttacaggagtatatcgaatatggacagcagtctagagat
cctcctgtgaaaatgcagggttctattacaacccctggaagtattgcactggctcaggcc
caagctcaggcccaggttccagcaaaagctcctcttgctggtcaggttagcactatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttcgattaatactacaaatatagatacattgcttgtg
gccacagatcaaacagagagaattgtggagccaccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacaatcgaacatgacacaaaaggttgaagagctaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctggttatgaaaagagtcagt
attgagccaaactttcacagcctgtattcaaacttccttgacaccctgaagaatcctgac
tttaacaagatggttttgaatgagacctacagaaacatcaaagtgctcctgacatctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggcttgga
atgatcacactagctaaaaataaacccatcctacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagaattgctctatgtagtgcccttcgttgcc
aaagttctagagtctagcatacgtagtgtggtgtttaggccaccaaacccctggacaatg
gcaattatgaatgtattagctgaactacatcaggaacatgacttaaagttaaacttgaag
ttcgagattgaggtcctgtgtaagaaccttgcattagacatcaatgaactaaaacctgga
aacctcctaaaggataaagatcgcctgaagaacttagatgaacaactctctgctccaaag
aaagatgtcaagcaaccagaagaacttcctcctatcacagccacaacaacttctacaaca
ccagctaccagcaccacctgtacagccactgttccaccacagccacagtatagctaccat
gacatcaatgtgtattccctcgcaggcctggcaccacacattactctaaacccaacgatt
ccattgttccaggcccatccacagttaaagcagtgtgtgcgtcaagcaattgaacgggct
gtccaagaactggtccatcctgtggtggataggtcaattaagattgccatgactacttgt
gaacaaatagtcaggaaggattttgccctggattctgaggaatcccgaatgcgaatagca
gctcatcatatgatgcgtaacttgacagctggaatggccatgattacttgcagggaacct
ttgctcatgagcatatctaccaacctgaaaaacagttttgcctcagcccttcgtactgca
tccccacagcaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacacgcgaggcaggaagggcgcaggtac
tgtgatcctgtagtattaacataccaagctgagcggatgccagagcaaatcagactgaaa
gttggtggtgtggacccaaaacagttggctgtttatgaagagtttgcgcgcaatgtgcct
ggctttttgcctacgaatgacttaagtcagcccacgggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagaattggaa
cagcatctgcatgccatcccaccaactttggccatgaaccctcaagctcaagctcttcga
agtcttttggaggttgtagtgttatctcgaaactctcgggatgccatagctgctcttgga
ttgcttcagaaggctgtagagggcttgctagatgctacaagtggtgctgatgctgaccta
ctgctgcgttacagggaatgccacctcttggtcctaaaagctctgcaggatggccgggca
tatggatctccgtggtgtaacaaacagatcacaaggtgcctaatcgaatgtcgagatgaa
tataaatacaatgtggaggctgtggaattgctaattcgtaatcatctggttaatatgcag
cagtatgaccttcacctagctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgctgcccatgttact
gaggctgatctgttccacaccattgaaaccctaatgaggattaatgctcactccagaggc
aatgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggagggcctaactttatgatgcattctgggatctctcaagcctca
gaatacgatgatcctccaggcctgagggaaaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcaccagcaaggaatcctgaagactgatgacctcataacaaggttctttcgt
ctgtgtacagaaatgtgtgttgaaatcagttaccgtgcccaggctgagcagcagcacaat
cctgctgctaatcccaccataatccgagccaagtgctatcacaacctggatgcctttgtc
cgactcattgcactgctagtgaagcactcaggggaggccaccaacactgtcacaaagatc
aatctgctaaacaaggttcttggtatagtagtgggagttcttctgcaggatcatgatgtt
cggcaaagtgagtttcagcagcttccctaccatcgaatttttattatgctgctcttggaa
ctcaatgcacctgaacatgttttggaaaccattaatttccagacactgacagctttctgc
aatacattccacattttgaggcctaccaaagcccctggttttgtgtatgcctggcttgaa
ctgatctcccaccggatatttattgcacgaatgctagcacatacaccacagcagaagggt
tggcctatgtatgcacagctactgattgatttattcaaatatttagcgcctttcctcaga
aatgtggaactcaccaaacctatgcaaatcctctataagggcactttaagagtgctgctg
gttcttttgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atcccacctaattgtatccagctaagaaatctgatcctgagtgccttcccaagaaacatg
agactcccagacccattcactcctaatctaaaggtggacatgttgagtgaaattaacatt
gcacctcggattctcaccaatttcactggagtgatgccacctcaattcaaaaaggatttg
gactcctatctcaaaactcgatcgccagttacttttttgtcggatttgcgcagcaaccta
caggtgtccagtgagcctggcaatcgctacaacctccagctcatcaacgcactggtgctc
tatgtagggactcaggccattgcacacattcacaacaagggcagtacgccttctatgagc
acgatcacccactcagcacacatggatatcttccagaacctggctgtggacttggacact
gaaggtcggtatctcttcttgaatgcaattgcaaatcaactacggtacccaaacagccac
acacattacttcagttgcaccatgctgtacctttttgcagaggccaacactgaagctatc
caagaacagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttctcattactttcattgagctgattaaaaatccagcatttaagttctggaaccac
gagtttgtacactgtgccccagaaattgaaaagttattccagtcggtcgcacagtgctgt
atgggacagaagcaagctcagcaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
