Trichechus manatus latirostris (Florida manatee): 101347966
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Entry
101347966 CDS
T05135
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmu03021
]
101347966
03041 Spliceosome [BR:
tmu03041
]
101347966
Transcription machinery [BR:
tmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101347966
Spliceosome [BR:
tmu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
101347966
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101347966
NCBI-ProteinID:
XP_023584655
UniProt:
A0A2Y9QME4
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQLQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEA
KKEIPASQLPHVSESVNNSIFHQIAEQLQQQNFEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDESIDIQQQDMDIDEGQDVVEEEIFEQEAKKVAVRSR
SRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGAKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSTEPVKETVQTTQSPPPPVEKETVVTTQAEVFPPPV
AMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPLPPPPFLRASFNPSQPPPGFMPPPVP
PPVGPPPAIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGNVFN
PPAKQAEPEEKGPHFTDHQISSGENPRAVIPNDVSCTPAILGGPPSNVTNNSGILGVQRS
NVSSNSEILGVRPSNVSSSSGIIGPQPPNILNNSGILALQPPSVSSSSGLLGVLPPNMPN
SAGLVGIQPPNVPNTSGLMGTQPPAGPQNLPPLSISSQRMPAMPMLDIRPGLMPQAPGPR
FPLMQPGIPPHRGLPPPSVLDSALHPPPRGPFPPGDIFSHPERPFLAPGRQGVDSVPNPE
KRLPLGNDNIQQEGDRDYRFPPIETRESISMPPPVDVRDVVGRPVDPREGPGRPPLDGRD
HFGRPPVDMRENLVRPGIDHLGRRDHFGFNPEKHWGHRGDFDEREHRVLPVFGGPKGLHE
ERGRFRPGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRL
GRDRIPNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPLQVQNDPELYE
KLASSSEINKEKSDTVADIESEPVVESTETEGT
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtgaaaaccttcaacagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatactgtattccctgaatgactacaaacca
cccatttctaaagcgaaaatgacccagattactaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagtgttgaaaaattcattcagaaatgtaaaccagaatacaag
gtccctgggctttatgttattgactccattgtacgacaatcccgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgtcctggggatgacaagagtaagatagtgagagtattaaacttgtggcagaag
aataatgtatttaagagtgagattattcagcctcttttggacatggcagcagggattcct
cctccagttgtcacccctgttttggccagtactactgctgctatgagcaatacgccagga
actcctgtgacacctgttactccagccaatgtagtccaaggtttacctgatccttgggtg
tctcagataacaaatacagatacacttgcagctgtggctcagatcttacaaagtcctcaa
ggccaacagcttcagcagttaatacagactttacagctacaacagcagaagccccagcct
tccattctgcaggccctggatgctggtcttgttgttcagttgcaggcgctcacagcacaa
cttacagctgcagctgcagcggcaaacaccctgaatcccctagaacagggagtctctttt
aacaagaagttgatggataggtttgactttggagaagattctgagcatagtgaggaagcc
aaaaaggaaattccagcttctcagcttcctcatgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacagcttcagcagcaaaactttgaacatcttagacagcagctc
ctggagcagcaacagcctcaaaaggcaacccctcaggatagtcaagagggaacatttggg
tcagagcattcagcgtctccatcacaagggagcagccaacagcattttcttgaacctgaa
gcgaatttagatgagtccatagatatccagcaacaggatatggatatagatgaagggcaa
gatgtagtagaagaagagatctttgagcaagaagcaaagaaagtggctgttcgctcgaga
tcaagaacacgttcacgatctcgttcaagatcaccaagaaaacgaagatccaggtcacga
tctggttctcgaaagcgtaaacacagaaaacgatcacgttcccgctcaagagaaagaaag
aggaaatcatcacgttcatattcaagcgaaagaagagctagagaaagggagaaagaacga
cagaaaaagggcttacctcccattagatctaaaacgttaagtgtctgtagtactactctc
tgggttggccaggtggacaagaaagcgacacagcaagatttaaccaacctgtttgaagag
tttggacaaattgaatctatcaacatgattcctcccaggggctgtgcttatgtttgtatg
gtccaccgacaagatgcatttcgagctcttcagaaacttagttctggatcatataaaatt
ggggccaaagtcattaagattgcctgggctttaaacaaaggtgtaaaaacagaatacaaa
cagttctgggatgtggatcttggcgttacatatattccatgggaaaaagttaaagtggat
gacttggaaggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgagtgg
gaaacggtgaaaagcaccgaacctgttaaagagacggtccagacaactcagagtccacca
cctccggttgaaaaggagacagtcgtcacaacccaggcagaggttttccctccacctgtt
gccatgttgcagatcccagtagcgccagccgtgcctgcggttagtttagtcccaccagca
tttcctgtgtcaatgccggttcctccccctgggttcagtccactgcctccacctcctttt
ctgcgagcaagttttaacccttcacaaccacctcctggtttcatgccacctccagttcca
ccacctgttgggccaccacctgctattccaccagtggtaccaacatctttagtgcagccg
ccgttatccatgacgccagaaactgtgaaagatgttggttttggtagccttgttttgcca
ggtggttctgttgccagcagtcttgctacttctacactgccagctggaaatgtttttaat
ccaccagctaaacaagcagagcctgaagaaaaaggacctcattttacagaccaccagatt
tcttctggtgaaaaccccagagcagtgattccaaatgatgtttcatgtacccctgcaatt
ttagggggaccgccctcaaatgtgacaaacaactctggaattcttggagtccaaagatca
aacgtatcaagtaattctgaaattcttggagtccggccatctaatgtttccagtagttct
gggataattggaccccagccaccgaatattctaaataactctggaattttggcattacaa
cctccaagtgtgtcaagtagttctggacttttgggagtgctacccccaaatatgcctaac
agtgctggacttgtaggaatacagccaccaaatgttcccaatacctctggacttatggga
acacaaccaccagctgggcctcaaaacttaccccctttaagtatctctagtcaaaggatg
cctgcaatgccaatgttagacattcgcccaggactgatgccacaggcgcctggaccaaga
ttccctttaatgcagcctggaattccaccccaccggggacttcctcccccatcagtactt
gattcagctcttcacccaccaccccgtggtccttttcctccaggagatatttttagtcat
cctgaaagaccttttctagctcctggaaggcaaggtgtagacagtgttcctaatccagaa
aaaaggcttccacttgggaatgataacattcagcaagaaggcgatagagattaccggttt
cctcctatagaaaccagggaaagcattagtatgcctcccccggtggacgttagggatgtg
gttgggcggcctgtagatccacgcgaaggtcctggaaggcctccattagatggtagggat
cattttggaagaccacctgtagatatgagagagaaccttgtgaggcctggtatagatcat
cttggtcgaagagaccattttggctttaatccagagaagcactgggggcatagaggagat
tttgatgagagagagcatcgggttctacctgtctttggtggtccaaaaggcttacatgaa
gaaagaggtagatttcggcctggaaactatagatttgatcctagaagtggtccttggaac
agaggatttggacaagaagttcacagagattttgatgaccgcagaagaccctgggaaagg
caaagggatagggatgacagagattttgatttctgcagagaaattaatggaaatcgcctt
ggacgagatagaattccgaacacttgggtcccacctcctcatgctcgggtttttgattat
tttgaaggggccacttctcaacgaaaaggtgataatgtgcctcaggttaatggtgaaaat
acagagagacatgctcaaccaccacctttacaagtacagaatgatcctgaactttatgaa
aaactggcatcttcaagtgagataaacaaggagaagagtgacacagttgctgatatagaa
agtgaaccagtggtagaaagcacagaaactgaggggacataa
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