Trichechus manatus latirostris (Florida manatee): 101348122
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Entry
101348122 CDS
T05135
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X2
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101348122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101348122
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101348122
Spliceosome [BR:
tmu03041
]
Complex A
U2 snRNP components
U2 related factors
101348122
Complex B
101348122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
PMI_typeI_cat
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
101348122
NCBI-ProteinID:
XP_004384766
UniProt:
A0A2Y9E0F8
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRSRS
KEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEVEGEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKVVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTSVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQL
AEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISE
YSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSY
QPTNKGRYKVL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtcacgccactatcggaaacggtcagcatcacgtggacgctctggaagt
cgatctagaagtcgttctccctcagacaaaagaagtaaacgtggagatgacagacggtct
agaagtagagatagagatagaaggagagagagatctcgcagcagggataaaagaagatct
cggtcaagagacaggaaacgtctgaggcgttccagaagtagagagagagacagaagccga
gagcgaagaagatctcgcagtcgagacaggagacgctcaagaagcagaagccggggccgg
cgatccagatcctccagtcctggcaataaaagcaagaaagccgagaatagatctaggtcc
aaagaaaaaacagatggtggagaaagttctaaagagaagaaaaaagacaaagatgacaag
gaggatgaaaaagaaaaagatgctggtaattttgaccagaataagctggaagaagaaatg
agaaagcgaaaagaaagagtagaaaaatggcgagaagagcaacgtaaaaaggccatggaa
aatataggggaactgaaaaaggaaattgaagagatgaagcaagggaaaaaatggagttta
gaagatgatgatgatgatgaagacgatcctgcagaagctgaaaaggaaggaaatgaagtg
gagggtgaggaattagatccgttagatgcttacatggaagaagtgaaagaggaagtaaaa
aagtttaacatgagaagtgtaaaaggtggtgggggaaatgaaaagaagtccggaccaact
gtcacaaaagttgtcactgttgtgactaccaaaaaagtggttgtagactctgataagaag
aaaggtgagctcatggagaatgatcaggatgcgatggagtattcttcagaggaagaagaa
gttgatcttcagacggcccttacaggctatcagacaaaacagagaaagcttctagaacca
gttgatcatggaaaaattgaatatgaaccatttaggaaaaatttctatgttgaagttcca
gagctagcaaaaatgtctcaagaggaggtgaacgtatttcgattggaaatggaaggcatt
acagtcaagggaaagggttgccccaaaccaattaaatcttgggtccagtgtggaatttcc
atgaagattttaaattccctcaaaaaacatggctatgaaaagcccacgccaatccagacc
caagcaattcctgccataatgtctggacgagacttgattggcattgccaagacaggaagt
ggaaagaccattgcttttctgctgcccatgtttagacacatcatggatcagaggtcatta
gaagaaggagaggggccaatagctgtcatcatgactccaactcgagaactggctctacag
attactaaagagtgtaagaagttttcaaagaccttgggacttagagtggtctgtgtttat
ggaggaacaggaatcagtgaacagattgctgaactgaaaagaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgttagcagctaacagtggtcgggtcacaaatctt
cgaagggtgacatatgttgttttagatgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggataatgtccgtcctgatcgacagacagttatgttttca
gctactttccccagagctatggaggctttggctcgtagaatcctgagtaaacccattgaa
gtgcaggttggaggcaggagtgtggtttgctcagatgtggaacaacaagtgattgtgatt
gaagaagagaagaaattcttgaagttacttgagcttctaggccattatcaagaatcagga
tcggttattatatttgtggacaagcaggaacatgctgatggtcttctgaaagatttaatg
agagcatcttatccttgcatgtctcttcacggaggtattgatcaatatgacagagacagc
atcataaatgactttaaaaatgggacctgcaaacttcttgtggccacctctgttgctgcc
cgaggtctggatgtgaaacatctgattcttgtagtaaattacagctgccccaaccattat
gaagattatgtgcacagagcaggacgaactggaagagcaggcaacaaaggttatgcctat
acttttatcacagaagatcaagctcgctatgctggtgacataataaaagcccttgaattg
tcagggacttcggtgcctcctgatctagagaaactttggagtgatttcaaagatcaacag
aaagctgaggggaagataattaaaaagagtagtgggttctctggtaagggattcaagttt
gatgaaacagaacaagctttggctaatgagaggaagaagttacaaaaggcagctcttggt
ctgcaagattcagatgatgaggatgctgccgttgatattgatgagcaaattgaaagcatg
tttaattcaaagaagagagtgaaggatatggctgctcccggaacatctagtgttcctgct
cctaccgcaggaaatgctgagaaattagaaattgctaagagattggctctcagaatcaat
gcacagaagaatttaggcatcgagtctcaggatgtgatgcaacaggccaccaatgcaatt
ctcagaggtggcaccattctggctcccactgtgtctgcaaaaaccattgcagagcaactc
gctgaaaagatcaatgccaagctcaattatgtacctttagaaaagcaagaagaggagaga
caggatggtggacagaacgaatcttttaagagatatgaggaagaattagagatcaatgac
ttcccacagactgctaggtggaaagttacctctaaggaagctctgcagagaatcagtgaa
tactctgaagcggcaattacaatcagaggaacatacttccctcctggcaaagaacccaag
gaaggagagcggaaaatttacttggcaattgaaagtgccaatgaactggctgtgcagaaa
gcaaaggcagaaatcacgaggctcataaaagaagaactgatccggctgcaaaattcatac
caaccaacaaataaaggaagatacaaagtcttataa
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