Trichechus manatus latirostris (Florida manatee): 101348587
Help
Entry
101348587 CDS
T05135
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmu03016
]
101348587
Enzymes [BR:
tmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101348587
Transfer RNA biogenesis [BR:
tmu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101348587
Prokaryotic type
tRNA splicing ligases
101348587
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101348587
NCBI-ProteinID:
XP_004373856
UniProt:
A0A2Y9DFR5
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKIEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactataatgatgagttgcagttcttggataagatcaacaaaaattgctgg
aggatcaagaagggcttcgttcctaacatgcaggtggaaggagttttctacgtgaacgat
gccttggagaagttaatgtttgaggagttgcggaatgcctgtcgaggtggtggtattggt
ggcttcctgccagctatgaaacagattggcaatgtggcagccctgcctggaattgttcat
cgttccattggtcttcctgatgtccactcaggttatgggtttgctattgggaacatggca
gcctttgatatgaatgaccctgatgctgtggtttcgccaggtggtgtcggatttgatatc
aactgtggtgtccgtttgctaagaaccaatttagatgaaagtgatgttcagcccgtgaag
gagcaacttgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccttg
agagaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caggccgaccccaacaaggtctctccaagggccaaaaaaagaggccttcctcagttgggg
accctgggagccggcaaccattacgcagaaattcaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgaccacaagggacaggtgtgtgtgatgatccacagt
gggagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcctgtgctcgaattgcttcc
acagagggtcaggactacctgaagggaatggctgcggctgggaactatgcctgggtcaac
cgctcctccatgaccttcttaacccgtcaggcctttgccaaggtcttcaacacaaccccg
gatgacttggacctacatgtgatctatgacgtttctcacaatattgccaagatagagcaa
catgtggtggacggaaaggagcggacgctgttggtgcacaggaagggatccacccgagct
ttccctcctcaccaccccctcattgccgtggattaccagctcactggacaaccggtgctt
attggtggcaccatgggaacctgtagttacgttcttactggcactgaacagggcatgact
gaaacctttggaaccacctgtcatggagcgggtcgtgcgctgtctcgagcaaaatctcgg
cgtaacttagatttccaggatgtcttagacaaattggcagatatgggaattgcaatccgt
gttgcctcacccaaactagttatggaagaggctcctgaatcctataagaacgtgacagat
gtggtgaacacctgccacgatgctggaatcagcaagaaggctatcaaactgaggccaatt
gctgttatcaaaggatag
DBGET
integrated database retrieval system
