Trichechus manatus latirostris (Florida manatee): 101348895
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Entry
101348895 CDS
T05135
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X2
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101348895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101348895
03036 Chromosome and associated proteins [BR:
tmu03036
]
101348895
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101348895
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101348895
mRNA degradation factors
5'-3' decay
Decapping complex
101348895
Chromosome and associated proteins [BR:
tmu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101348895
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
101348895
NCBI-ProteinID:
XP_004385709
UniProt:
A0A2Y9E2I8
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcaaaatggtcaa
ctgaggggccctgtgaagcccagtggtggccccggaggagggggaacacagacacagcaa
cagatgaaccagctgaaaaacaccaacacaatcaataatggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgaatttgaagat
tactgtttgaaacgggagttactaatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaagagcggtgcctacctcattcccttacttgaacggctagacctg
aagaaggacaatatacaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaactaca
ggaggaaccaatttacgggatgacataatgaggcttgatgacacagtgcatgtggtgata
gctacccctgggagaatcctggatcttatcaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcggataagttgctgtcacaggattttgtacagataatg
gaggacattattctcacgctacctaaaaacaggcagattttactatattccgctactttc
cctcttagtgtacagaagttcatgaattcccatttgcaaaaaccctatgagattaacctg
atggaggaactaactctgaagggagtaacccagtactacgcatatgtaactgagcgccaa
aaagtacactgcctcaacacacttttttccaggcttcagataaaccagtcgatcattttc
tgcaactcctctcagcgagttgaattgctagccaagaagatttcccaactgggttattct
tgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtatttcatgatttc
cgaaatggcttatgccgaaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtgataaactttgacttcccaaagctggcagagacctatctccat
cgaattggaagatcaggtcgctttggtcaccttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaaaagtattgaggagcagctgggaacagaaattaaacctatc
ccaagcaacattgacaagagcctgtacgtggcagaataccacagcgagcctgtagaagat
gagaaaccttaa
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integrated database retrieval system
