KEGG   Trichechus manatus latirostris (Florida manatee): 101351108
Entry
101351108         CDS       T05135                                 
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101351108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tmu03019]
    101351108
Messenger RNA biogenesis [BR:tmu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     101351108
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 Collagen WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR11_2nd Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 101351108
NCBI-ProteinID: XP_004387094
UniProt: A0A2Y9E6F0
LinkDB
Position
Unknown
AA seq 1336 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHIGPQGPPGSQGHIGPQ
GPPGPQGHLGPQGPPGPQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLN
PRGIQGPAGPRENQGPAPQGMMMGHPPQEMRGPHPPSGLLGHGPQEMRGPQEIRGIQGPP
PQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPPQGPI
PFQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR
GPPNHHMGPMSERRHDQSSGPDHGPERGPFRGGQDCRGPPDRRGPHPEFPDDFSRPDDFH
PDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHRDFSEGDGRGATRVPPGVWEGR
RPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASD
EAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPR
PDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEATGGPSEDRGSK
GRGGPGPSQRVPKSGRPSSLDGDHHDNYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMN
SGPPRRGASRGGGRGR
NT seq 4011 nt   +upstreamnt  +downstreamnt
atggctacagaaattggttctcctcctcgttttttccatatgccaaggttccaacaccag
gcacctcgacagctgttttataagcgacccgattttgcacaacagcaagcaatgcaacag
cttacctttgatggaaaacgaatgagaaaagctgtaaaccgaaaaaccatagattacaat
ccatctgtaattaaatatttggagaatagaatatggcaaagagaccagagagatatgcgt
gcaattcagcctgatgcaggttattataatgatctggtcccacctataggaatgttgaat
aatcctatgaatgcagtaacaacaaaatttgttagaacatcaacaaacaaggtgaagtgt
ccagtatttgttgtaaggtggactccagaaggaagacggttggtaactggagcttctagt
ggagagttcaccttgtggaatggactcactttcaattttgaaacaatattacaggctcat
gatagcccagtgagggccatgacttggtcacataatgacatgtggatgttgacagcagat
cacggaggatatgtgaaatactggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcatggtgctgatgtgaaatgtgtagattggcatccaacaaaagggttagttgtt
tcaggaagtaaagatagtcaacagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcacgcccataaaaacacagtaatggaagtaaaattgaatctcaatggc
aattggctactcacagcgtcacgtgaccatctctgtaaactttttgacatccgaaacctg
aaagaagagcttcaagtcttccgaggtcataagaaagaagccacagctgtggcctggcat
cctgttcatgaaggactttttgccagtggagggtctgatggttctttgttattctggcat
gttggggtggaaaaagaagtgggtggaatggagatggcccatgaaggaatgatctggagt
ctggcgtggcatcctcttggacacatcctctgctcaggctcaaatgaccacactagcaaa
ttttggacacgaaatcgaccaggtgataaaatgcgagatcgatataatttaaatctacta
cctggaatgtctgaagatggagtagaatatgatgaccttgaacctaatagcctggcagta
attccagggatgggaataccggaacaactaaaattagctatggaacaagagcagatgggg
aaagatgaatcaaatgaaattgaaatgacaattccaggtttagattggggaatggaggaa
gtgatgcaaaaggatcaaaaaaaagtacctcagaagaaagttccatatgcaaaaccgatt
cccgctcagttccagcaagcttggatgcaaaataaagttccaattcctgctccaaatgag
gtactgaatgacagaaaagaggacattaaattggaagagaagaaaaaaacacaagcagaa
attgagcaagaaatggctacactgcagtatactaacccacagcttctagagcaacttaaa
attgaaagacttgcacagaaacaggctgagcaaattcagcctcctccctcatctggcacc
cctctcctcggaccccagccatttccaggacaaggtccaatgtctcaaattcctcagggt
tttcaacaaccccatccatctcagcagatgccaatgaacatggctcagatggggccacca
ggcccacagggacagtttagaccccctggaccgcagggacaaatgggaccacaaggccct
ccactgcatcagggaggtggggggccccaaggattcatgggaccacaagggccccagggc
ccaccccagggattgcccaggcctcaagatatgcatgggccccaaggaatgcaaagacat
cctggacctcatggccctttgggacctcaagggccacctggaccacagggtagttctggt
ccgcaaggtcatataggtcctcagggtccacctggctcacagggtcacataggcccccag
ggcccgcctggtccccagggtcatttgggccctcagggaccaccaggtcctcaaggtatg
cagggaccacctggtcccagagggatgcaaggacctcctcatcctcatgggatacaaggt
ggaccagggtctcaagggatccaaggtcctgtgtctcagggacctctgatgggattgaat
ccaagaggaatacaggggcctgcaggcccccgagagaatcagggtcctgctccccaaggg
atgatgatgggccacccgcctcaagagatgagaggacctcaccctccaagtggactgctg
ggacatggccctcaggagatgagaggtccccaggagattcgaggcatacaggggcctcca
ccccaaggatcaatgctgggccctccccaggagttacgggggcctcctggctcacaaggt
cagcaggggccgccccagggctccttgggacctccaccccagggtggcatgcaagggccc
cctggacctcagggacagcagaacccggcaagagggccacatccacctcaagggccaata
ccattccagcagcagaaaacagctctgctaggtgatgggccccgggcccccttcaatcag
gaaggacagaacgcaggccccccacccctgataccaggcctagggcaacagggagcacaa
ggtcgcatcccccctcttaatcctggacaaggacctggccctaataaaggtgactcccgt
ggcccgccgaaccatcacatgggccccatgtcagagaggcggcatgaccagagcagtggc
cctgaccatggtccagagagggggcctttccggggcggccaggactgcaggggccccccg
gacaggcgcggtcctcaccccgagttccctgatgacttcagcagacctgacgacttccac
cctgacaaacgttttggccaccggttacgtgaatttgaggggcgaggaggacctttacca
caagaagagaagtggaggcgagggggtccaggacctccatttcctcctgatcacagggac
ttcagcgaaggagacggccggggcgcgactcgagtacccccgggggtgtgggaaggccgc
agacctggggatgaaagatttccccgggatcctgaggacccgcgttttcgagggcgcaga
gaagaaagcttcagaagaggagcccccccgagacatgaaggccgtgctccccccagagga
agggatggctttcctggccctgaagactttggtccagaagagaattttgatgcttctgat
gaagcagcccgaggaagagatctcaggggtcgaggtcggggtacaccacgaggaggaagg
aagggcttacttccaactcctgatgagttccctcgctttgaaggaggacggaaaccagac
tcctgggatggaaatagagagccaggcccaggtcatgaacatttccgtgatgctccccgc
cctgatcatccccctcacgatggtcattccccagccagcagagaacggtcctcttctctc
caaggcatggacatggcatcactgccaccccgaaagcgcccctggcatgacgggccgggg
acctctgagcacagagaaatggaagccactggagggccttcagaagatcgaggtagcaaa
ggccgagggggcccaggaccttcccagagagtgccaaaatccgggcgtcccagctccttg
gatggtgatcatcatgacaactaccaccgagatgaaccttttgggggccctccgggcagt
ggtaccccttctagagggggcaggagtggcagtaactggggtagagggagtaacatgaac
tctggcccaccaaggcgaggagcttcaaggggtggtggaagaggccggtag

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