Trichechus manatus latirostris (Florida manatee): 101352449
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Entry
101352449 CDS
T05135
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101352449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101352449
Spliceosome [BR:
tmu03041
]
Complex A
U1 snRNP components
U1 related factors
101352449
Complex B
101352449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
101352449
NCBI-ProteinID:
XP_004375443
UniProt:
A0A2Y9DIP3
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESRPPSRGPGNGERRLPGSSLCSSSWVS
ADGFLRSRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGSLITKSNLHAMIKAEESSKQEESTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANASASTSTSNTVGGTVPVVPEPEVTSIVATVVDSENTVTISTEEQAQLTSS
TPAVQEQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELL
KEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAK
ESFQRFLENHEKMTSTTRYKKAEQMFGEMDVWNAISERDRLEIYEDVLFFLSKKEKEQAK
QLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEH
IRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDI
RFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAVIS
STKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELD
AVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRK
RSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSD
SPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEK
RRRTLLEQLDDDQ
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagtccgacgatgaggccggggacg
ggagcagagcgtggaggcctcatggtgagtgaaatggagagccgtcctccgtcgcggggt
cccgggaacggggagcggagattgcccggctcaagcctctgctccagctcttgggtctct
gctgacggcttcctgaggagccggccctcgatgggacaccctggcatgcactatgccccc
atgggaatgcatcctatgggtcagagagcgaatatgccaccagtacctcatggaatgatg
ccgcaaatgatgccccctatgggagggccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctgggatgatgatgtctcatatgtctcaggcttccatgcagcctgcttta
ccgccaggagtaaataatatggatgtagcagcaggtaccacatctggcgcaaaatcaatg
tggactgaacacaaatcacctgatggaaggacttactactacaatactgaaacaaaacag
tctacttgggagaagccagatgatcttaaaacacctgctgagcaactgttatctaaatgt
ccttggaaggagtacaaatctgactctggaaagccttactattataattctcaaacaaaa
gaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agtaagcaagaagagtccactaccacatcaacagccccagttcctacaacagaaattccg
actacaatgagcactatggctgctgccgaagcagcagctgctgttgttgcagctgctgct
gctgctgcagccgctgctgctgcagccaatgccagtgcttccacctctacttctaatact
gtcggtggaactgttccagttgttcctgagcctgaagttacttccattgttgctactgtt
gtagatagtgaaaatactgtaactatttcaactgaggaacaagcacaacttactagtagt
actcctgctgttcaagagcaaagtgtggaagtatctagtaatacaggagaagaaacatct
aagcaagaaactgtagctgattttacccccaaaaaggaagaagaggaaagccaaccggcc
aaaaaaacatatacttggaatacaaaggaagaggcaaagcaagcctttaaagaattattg
aaagaaaagcgggtaccatctaatgcttcatgggaacaagctatgaaaatgatcattaac
gatccacgatacagtgctttagcaaagttgagtgaaaaaaaacaggcctttaatgcttat
aaagtccagaccgagaaagaagaaaaagaagaagcaagatcaaaatacaaagaggctaaa
gaatcctttcagcgtttccttgaaaatcatgaaaaaatgacttctacaaccagatacaaa
aaagcagagcaaatgtttggcgagatggatgtctggaatgcaatatcggaacgtgatcgt
cttgaaatctatgaagatgttttgttctttctttcaaaaaaagaaaaggaacaagcaaag
cagttgcgaaagagaaattgggaagccttaaaaaatatacttgacaacatggctaacgta
acatactctactacttggtctgaagcccagcagtatctgatggataatccaacttttgca
gaagatgaagagttacagaacatggacaaagaagatgcattaatttgctttgaagaacac
attcgagctttagaaaaggaagaagaagaagaaaaacagaagagtttgctgagagaaagg
agacgacagcgtaaaaatagggaatcctttcagatatttttagatgaattgcatgaacat
ggacaactgcattctatgtcttcttggatggaattgtatccaacgattagttctgacatt
agattcactaatatgcttggtcagcctggatcaactgcacttgatcttttcaagttttat
gttgaggatcttaaagcacgttatcatgatgagaagaagataataaaagacattctaaag
gataaaggatttgtagttgaagtgaatactacctttgaagatttcgtggcagtaatcagt
tcaactaaaaggtcaaccacattagatgctggaaatattaaacttgctttcaatagttta
ctagaaaaagcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatgaaa
cgaaaagaatctgcctttaagagtatgttgaaacaagctgctcctccgatagaattggat
gctgtctgggaagatatccgggagagatttgtaaaagagccagcatttgaggacataact
ctggagtctgaaagaaaacgaatatttaaagatttcatgcatgtgcttgagcatgaatgt
cagcatcatcattcaaagaacaagaaacattctaagaaatctaaaaaacatcataggaaa
cgctctcgctctcgatcggggtcagattcagatgatgacgatagccattcaaagaaaaaa
agacagcgatccgaatctcgttctgcttcagagcattcttctagtgccgagtctgagaga
agttacaagaagtcaaaaaagcataagaagaaaagcaagaagaggagacataaatctgac
tctccagagtcagatgctgagcgagagaaggacaaaaaagaaaaggatcgagaaagtgaa
aaggacagaaccaggcaaagatcagaatcaaaacataaatcacctaagaaaaagactgga
aaggattctggtaattgggatacttctggcagtgaactgagcgaaggagaattagaaaag
cgcagaaggacccttttggagcaactggatgatgatcaataa
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