Trichechus manatus latirostris (Florida manatee): 101354243
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Entry
101354243 CDS
T05135
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
101354243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tmu03000
]
101354243
Transcription factors [BR:
tmu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101354243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
101354243
NCBI-ProteinID:
XP_004372647
UniProt:
A0A2Y9DEJ4
LinkDB
All DBs
Position
Unknown
AA seq
408 aa
AA seq
DB search
MSSPDAGYASDDQSQARSTLPAVMAGLGPCPWAESLSPLGDMKVKGEAAAGSGAPAGASS
RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHSLAEPPVAVLGPEVGRGGMDGLG
MPFADQGFPPGPPLLPPHMGGHYRDCQGLGLPPLDGYQLPTPDTSPLDGVEPDPAFFGAP
LPADCPAAASAYNYPQASDYAEPPEPPAGPQHARLGPEPAGPALPGLLAPPSALHLYYGA
LGSPAAAGGTRCFQMQPPQHPPGPGQPSPPPEALPCRDGADQSQPSELLGEVDRTEFEQY
LHFVCKPEMGLPYQGHDSSVNLPDSHGALSSVVSDASSAVYYCNYPDV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcccggatgcgggatacgccagtgacgaccagagccaggcccggagcacgctg
cccgcggtgatggccgggctgggcccctgcccgtgggccgagtcgctgagccccctcggg
gacatgaaggtgaagggcgaggcggcggcgggcagcggcgcgccggccggagcctccagc
cgggccaagggcgagtctcgtatccggcggcccatgaacgccttcatggtgtgggcgaag
gacgagcgcaagcggctggcgcagcagaacccagacctgcacaatgcggagctgagcaag
atgctgggcaagtcgtggaaggcgctgacgctggcggagaagcggccttttgtggaggag
gcggagcggctgcgcgtgcaacacatgcaggaccaccccaactacaagtaccggccgcgg
cgccgcaagcaggtgaagcggctgaagagggtggagggcggcttcctgcacagcctcgcg
gagccgccggtcgccgtgctgggccctgaggtcggccgcgggggcatggacggcctgggc
atgcccttcgcggatcagggtttcccccccggcccgccgctgctgcccccgcacatgggc
ggccactaccgcgactgccagggcctgggcctgcccccactcgacggctaccagctgccc
acgcccgacacgtccccgctggacggtgtcgaacccgacccggccttcttcggcgcccca
ctgcccgcggactgcccggcggctgcgagcgcctacaactacccacaggcctcagactac
gcggagcccccagagccacccgccggaccccagcacgcccggctcggccccgaacccgcg
ggccccgcgctgccgggcctcctggcgccccccagcgccctgcacctgtactacggtgcc
ctgggctcgccggcggcggcaggcggcacgcgctgcttccagatgcagccgccgcagcac
ccgccggggcccgggcagccgtcgccgcctcccgaggcgcttccctgccgggacggcgcg
gaccagagccagccctccgagctcctcggggaggtggaccgcacggagtttgaacagtat
ctgcacttcgtttgcaagccggagatgggcctcccttaccagggacatgattctagtgta
aatctcccggacagtcacggggccctctcctctgtggtgtctgatgccagttctgcggta
tattactgcaactatcctgacgtttga
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