Trichechus manatus latirostris (Florida manatee): 101354248
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Entry
101354248 CDS
T05135
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101354248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101354248
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101354248
Spliceosome [BR:
tmu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101354248
Complex B
101354248
Complex C
U2 SnRNP specific factors
101354248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
101354248
NCBI-ProteinID:
XP_004374278
UniProt:
A0A2Y9DGQ9
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MNWNKGGPGMKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATGSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTGSAQQGHNSPDSPLASAAKSIPGFGNTGNISSAPVTY
PSAGAPGVNNTAPGNNSREGIGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGYRCPESSSRHADGHRHGENRHGGSGGRHGESRGANDGRNGESRKEGCNRESKMDPK
VESSKMDKMDNKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggccctggcatgaagaggggatttggctttggaggttttgcc
attagtgccggaaaaaaggaggaaccaaaactcccacagcagtcccacagtgcctttggg
gcaactggctcttcttcaggatttggaaagtcggctccaccgcagctcccttctttctac
aaaattggatctaagcgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagattctagcaacgttgatctgccttacattcctgctgaaaactcacctacccgccag
caattccattctaagccagcagattctgacagtgatgatgacccgttggaggcattcatg
gctgaagtggaggatcaggcagctagagacatgaagaggcttgaagacaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggtgtcgttcaggaggaggaggaagataat
ctggagtatgatagtgatggaaatccaatcgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaagagataaccaatctcaccccccagcagttaatagatcttcggcataagctcaat
cttcgggtctctggtgctgcgcctcctagaccaggaagtagttttgcgcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgctgcctttatatggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatggaccaattgccgtgattgtatgtcctactagagagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcgtataaccttcgctcggtggccgtg
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcggagattgtc
gtgtgcaccccaggtcgactgattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgaatgtttgacatgggttttgagtaccag
gtgcgatccatagcaagtcacgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaagaagattgaaaaattggccagagacatcctgattgatcctattcgagtagtg
cagggagatattggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcccagtaaatggaactggcttacccgacgtctggtggagttcacttcttcaggaagt
gtcctcttgtttgttactaaaaaagccaacgctgaagagctagccaataaccttaagcag
gaaggtcataatcttgggctgctccacggggacatggatcagagtgaaagaaacaaggtc
atttcggactttaagaaaaaggacatcccagttctggtggccacagatgttgcagcccgt
ggtctggatattccttcaattaagacagtcattaactatgatgtggcacgagacattgat
acccatactcacaggattggccgcacaggacgagcgggtgagaagggtgtggcctacacc
ttgctgacccccaaggacagcaattttgctggtgatcttgtccggaacttggaaggagcc
aatcagcatgtttccaaagaactcctagatctggcaatgcagaatgcctggtttaggaaa
tcccgtttcaaaggaggaaaaggcaaaaagctgaacattggtggtggaggcctaggctac
cgggagcgacctggcctgggctcagagaacacggaccgaggaaataacaacaacgtcatg
agcaattatgaggcctacaagccttccacaggagccatgggagatcggctgacagcaatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagcctaagcaatcag
aaggctgggagctctgctgctggggcaagtggatggactagtgctgggagtctgaattct
gtcccaaccggttcagcccagcagggtcacaacagccctgacagccccctcgccagtgct
gccaagagcataccaggctttggcaatactgggaacatcagcagtgctccagtgacctac
ccttctgctggagccccaggagtcaacaacacagctccagggaataacagccgagaaggg
attgggggaggcaatgggaaaagagagagatatactgagaaccggggtggcagccgccat
agccatggagagagtggcaatcggcatggcgacagcccacgacatggagatggtggtcgc
catggtgatggataccgctgcccagaaagcagcagccgtcatgctgatggccatcggcat
ggggagaacaggcatggaggaagtggaggccgacatggggagagccggggcgcaaatgat
ggtcggaatggtgaaagcaggaaagaaggttgtaatcgtgagagcaagatggaccccaag
gtggagagcagcaagatggataagatggacaacaagacagataaaacagctgatggtttc
gctgtccctgagccacccaaacgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
